PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G095500.1.p
Common NameGLYMA_08G095500, LOC102667033
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 305aa    MW: 35515.6 Da    PI: 8.5216
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.28.7e-181151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i+ +  r++tf kR++g+lKKA+E S+LC+++v +ii++++
  Glyma.08G095500.1.p 11 IQKEKARKTTFNKRKKGLLKKAYEFSILCAVDVGIIIYAPK 51
                         778889********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-13161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.638151IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-18596IPR002100Transcription factor, MADS-box
CDDcd002668.12E-19575No hitNo description
PfamPF003197.4E-181150IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MCLERMPMEL IQKEKARKTT FNKRKKGLLK KAYEFSILCA VDVGIIIYAP KFLDEPETWP  60
QDQDSRELKR VIQKYQNTTS DRCPKVYSVQ EYFNDKMKKI EGEISKVHKE KIKLMYPTWN  120
DSYNTLGEEQ LRMFVSILDA KFDACSQRMN MLKKGKDKVE TLTPYMTSNV GMQNMSQTQF  180
FPPSDNKQVA FYPFQLSQSS QPSMFHFDKS CMQLMGKSTM VDWADQVGVD ANCDPKMGVV  240
LKEDGSDKNQ NSYYNRNLPS HLQYDATFQT LPDQPRQPPG FELNGFYDSN MLQPHFFNYM  300
HGRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225KEKARKTTFNKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586361.10.0agamous-like MADS-box protein AGL82
TrEMBLK7L5R60.0K7L5R6_SOYBN; Uncharacterized protein
STRINGGLYMA08G10111.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-22M-type_MADS family protein