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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.08G092400.4.p |
| Common Name | GLYMA_08G092400, LOC100791533 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31348.2 Da PI: 10.1504 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.08G092400.4.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 316.7 | 7.5e-97 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalver 77
mddd + n+gyyep +lglqlm ++erd+k+ r+ + l++ ++++++rd ++ rd+++++
Glyma.08G092400.4.p 1 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGMTERDTKPflpgRDPAM-LMGANGTFHPRDcvvseapmpLNY-VRDSWINQ-------- 78
899988779******98..4579******************9888888.99**********999999988788.89999999........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
+++++++++ +n +++ vl++t+ + +l+ ++++ + r+e+ +++++ ++e ++kk++++ ++pk+kk +k+
Glyma.08G092400.4.p 79 RDRFFHMQQPTN-------PNYAVLPETSGAPNLKI-----IQPPDTS-RDEKVDRVEEVVV-KKELGKSKKRHTKGALSTPKAKKPRKP 154
678889888555.......46899999999998887.....3333332.3333222333222.223333333333445566677666666 PP
GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257
k+ +++ + +r+k +kk+++lv+ng+++D+s lP+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiag
Glyma.08G092400.4.p 155 KD-------NSNVPV--QRAKPPKKTMELVINGIDMDISDLPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAG 235
66.......445555..6799********************************************************************* PP
GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
rKmSqgafkk+LekLaaeGy+++np+DLk+hWA+HGtnkfvtir
Glyma.08G092400.4.p 236 RKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 279
*******************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDVLNMPN WGYYEPFRGG HLGLQLMPGM TERDTKPFLP GRDPAMLMGA NGTFHPRDCV 60
VSEAPMPLNY VRDSWINQRD RFFHMQQPTN PNYAVLPETS GAPNLKIIQP PDTSRDEKVD 120
RVEEVVVKKE LGKSKKRHTK GALSTPKAKK PRKPKDNSNV PVQRAKPPKK TMELVINGID 180
MDISDLPIPV CSCTGAPQQC YRWGCGGWQS ACCTTNVSIY PLPMSMKRRG ARIAGRKMSQ 240
GAFKKVLEKL AAEGYNFANP IDLKTHWARH GTNKFVTIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
