PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G083900.1.p

Common Name

GLYMA_08G083900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 277aa MW: 31193.8 Da PI: 6.5169

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G083900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.9	7.2e-15	15	62	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ie+k q t++kR+ gi KKA+EL +LC+a+v +++f s+gk Glyma.08G083900.1.p 15 KKIEDKKDLQKTLAKRKCGIYKKASELTTLCGAKVDMLMFTSSGKWLS 62 689*****************************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.9E-17	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.946	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.05E-17	8	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-13	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-16	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-13	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-13	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MEGGNTKRKQ KREIKKIEDK KDLQKTLAKR KCGIYKKASE LTTLCGAKVD MLMFTSSGKW 60 LSYGEPSHQA NIRSSDEEND PTKDDINEPV EDHAKSKIDE LCEKNKALIH QLHYEEEREN 120 KLVEIMKTRN THGWWEAKIQ DLNCEKAKEL EASFVELKKK LENELSVKQG DNGKSSHGSN 180 LSEVIFGANN DARGISTSES IFPDISFSPI NEGGVFTFYP YGERREDLFD IVYPPTNQAR 240 GHNLFVNDAN ASSNHTHVAS SSKNSQENIP HLPNAI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G083900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028242380.1	0.0	agamous-like MADS-box protein AGL23
TrEMBL	A0A0R0IIX9	0.0	A0A0R0IIX9_SOYBN; Uncharacterized protein
STRING	GLYMA08G08870.1	1e-127	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18229	6	6
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28450.1	4e-18	AGAMOUS-like 58

Link Out ? help Back to Top
Phytozome	Glyma.08G083900.1.p