PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G082400.1.p | ||||||||
Common Name | GLYMA_08G082400, LOC100816891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 372aa MW: 40715.7 Da PI: 7.3413 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.7e-33 | 190 | 247 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Glyma.08G082400.1.p 190 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPTTVITTYEGQHNHP 247 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-35 | 174 | 249 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-29 | 181 | 249 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.983 | 184 | 249 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-39 | 189 | 248 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.9E-26 | 190 | 247 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MSVEPKELYY QDLVLDHNII NNQHQGTEAG SNTTMYEKHF SSTLIPSVSA AYDSSQAFDP 60 SYMSFTDCLQ GSMDYNSLAT SFGLSPSSSE VFSSVEGNQK PAEGGGDGGG GGGGSGGSET 120 LATLNSSISS SSSEAGAEED SGKSKKERQV KTEEGGENSK KGNKEKKKGE KKQKEPRFAF 180 MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC TVKKRVERSF QDPTTVITTY 240 EGQHNHPVPT SLRGNAAAGM FTPSSLLATP THPLAAGSNF PQDLFLHMHY PRHHHQYHHI 300 HNNLFATQSM TNATTATTTT TTATIAPSSF YSSYNNINNS LLNNQFLPPE YGLLQDIVPS 360 MLHNKSHHNQ N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-29 | 179 | 249 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-29 | 179 | 249 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G082400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-108 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532648.1 | 0.0 | WRKY transcription factor 28 | ||||
Swissprot | Q8VWJ2 | 3e-73 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | K7L5I7 | 0.0 | K7L5I7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G08720.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 4e-51 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G082400.1.p |
Entrez Gene | 100816891 |
Publications ? help Back to Top | |||
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