PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G078700.1.p | ||||||||
Common Name | GLYMA_08G078700, LOC102669548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 430aa MW: 47364.4 Da PI: 5.0804 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.2e-31 | 241 | 299 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ Glyma.08G078700.1.p 241 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 299 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-31 | 234 | 301 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.361 | 235 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-26 | 238 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 240 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 242 | 299 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MCNILGTIME NYQGDLSDII RASGASYGSC STGTSSSEAA NPFSRNYHLQ FSSDPMIFSS 60 VLEGFNSNFG DPFSNMRDPF LHELDLPLSA YFNSTSSSAE IKSSGALEEA TCFGGGVVAG 120 SSSSSNSCVL AQKILDEDDM RRPCNSILSN MIQISPNDKL PISPVVDSLS RPFKPSGAVS 180 GHNMIDAKTS SDYCLVDNTK VQISSPRNPG LKRRKSLAKK SICVPAPAAP NSRQSGEVVP 240 SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRTDPNMLVI TYTSEHNHPW 300 PTHRNALAGS SRSQPSKNNN IAASKNEEEE EEESNSDSNK VNNNVFVREE EKQLEMDDVE 360 FCDIGVPYYR PISKMNNYLQ LDQGLFAEFG EIEKDQSVNL LSPPQGFDDQ QRESNALDSF 420 HFFDWRGDI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-24 | 215 | 302 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-24 | 215 | 302 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G078700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 8e-97 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006584998.1 | 0.0 | probable WRKY transcription factor 35 | ||||
TrEMBL | I1KR98 | 0.0 | I1KR98_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G08340.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5430 | 34 | 54 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30650.1 | 4e-74 | WRKY DNA-binding protein 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G078700.1.p |
Entrez Gene | 102669548 |