PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G078100.1.p | ||||||||
Common Name | GLYMA_08G078100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 182aa MW: 20189.5 Da PI: 9.3129 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.8 | 1.5e-20 | 140 | 179 | 1 | 39 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkve 39 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+ Glyma.08G078100.1.p 140 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQ 179 58***************************99********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-21 | 125 | 179 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-19 | 133 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.426 | 135 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-13 | 140 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-18 | 141 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 182 aa Download sequence Send to blast |
MKFSAIQENN KRKDHEISLS LQDIATTSGE GPSRINEIFN KQIRQSAPSP PHTTDHDDSL 60 SESELGLSLR LQPSTSHHKE SDVGNNNKED KNDQQLASFA SVQNKLQRTH ELPGITTHAA 120 FPPNRKARVS VRARCEAATM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP GCPVRKQVQD 180 V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-14 | 130 | 179 | 7 | 55 | Probable WRKY transcription factor 4 |
2lex_A | 7e-14 | 130 | 179 | 7 | 55 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G078100.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT096848 | 1e-141 | BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028246643.1 | 1e-130 | probable WRKY transcription factor 9 | ||||
TrEMBL | A0A0R0IPH3 | 1e-134 | A0A0R0IPH3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G08290.2 | 1e-132 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9320 | 31 | 41 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-37 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G078100.1.p |