PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G065300.1.p | ||||||||
Common Name | GLYMA_08G065300, LOC100779119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 28005 Da PI: 10.05 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.6 | 3.8e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvtf+kRrng+lKK ELS+LCdaev vi+fsstgklyeys+ Glyma.08G065300.1.p 10 RIENSTNRQVTFCKRRNGLLKKTRELSILCDAEVGVIVFSSTGKLYEYSN 59 8***********************************************95 PP | |||||||
2 | K-box | 80.9 | 3e-27 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q e+a L+++++ Lq+++R+l+Ge+L+ L +++L++Le+qL+ sl+++R+kK++++ ++i+elq+k ++++n++L+kk+ Glyma.08G065300.1.p 81 DATSAIKFWQGEAASLRQQLQHLQENHRQLMGEELSGLGINQLKHLENQLQMSLNNVRNKKDHIFSDEIKELQQKGSLIRRQNEELHKKI 170 4567789**********************************************************************************9 PP K-box 99 e 99 + Glyma.08G065300.1.p 171 D 171 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.015 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.85E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.8E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.993 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGKIPIRR IENSTNRQVT FCKRRNGLLK KTRELSILCD AEVGVIVFSS TGKLYEYSNT 60 SMETIIERFN KQNNNHHRLM DATSAIKFWQ GEAASLRQQL QHLQENHRQL MGEELSGLGI 120 NQLKHLENQL QMSLNNVRNK KDHIFSDEIK ELQQKGSLIR RQNEELHKKI DLIHNENAEL 180 KKVIEARHKE EERAALKPPC AIKNRYDTLD PNSLQQRQSQ PQPSEPSAEV MIMGYSLKLK 240 M* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 3e-21 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G065300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532587.1 | 1e-179 | MADS-box transcription factor 23 isoform X1 | ||||
Refseq | XP_028247219.1 | 1e-179 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 7e-82 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A0R0ISX6 | 1e-177 | A0A0R0ISX6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JB47 | 1e-177 | A0A445JB47_GLYSO; MADS-box transcription factor 27 | ||||
STRING | GLYMA08G06981.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF891 | 25 | 60 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 3e-74 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G065300.1.p |
Entrez Gene | 100779119 |
Publications ? help Back to Top | |||
---|---|---|---|
|