PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G055900.1.p
Common NameGLYMA_08G055900, LOC106799700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 1044aa    MW: 113309 Da    PI: 8.1446
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G055900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1193.1e-06231249119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+Cq++CH+GpC pC+
  Glyma.08G055900.1.p 231 CGRHRCQQICHLGPCHPCQ 249
                          ******************6 PP
2zf-NF-X117.49.7e-06353370118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+++CH G+C pC
  Glyma.08G055900.1.p 353 CGIHHCEEPCHAGDCSPC 370
                          ****************** PP
3zf-NF-X118.25.6e-06449467119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H C++lCH G CppC 
  Glyma.08G055900.1.p 449 CGQHACESLCHSGHCPPCL 467
                          ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.53E-657126No hitNo description
PROSITE profilePS500168.53863125IPR019787Zinc finger, PHD-finger
PROSITE profilePS500898.93466123IPR001841Zinc finger, RING-type
PROSITE patternPS01359066122IPR019786Zinc finger, PHD-type, conserved site
CDDcd060084.62E-5156214No hitNo description
SMARTSM004380.29176194IPR000967Zinc finger, NF-X1-type
PfamPF014227.8178193IPR000967Zinc finger, NF-X1-type
CDDcd060087.82E-11221269No hitNo description
PfamPF014221.3E-4231248IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043231250IPR000967Zinc finger, NF-X1-type
CDDcd060089.02E-9285338No hitNo description
PfamPF014220.0013295312IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034295314IPR000967Zinc finger, NF-X1-type
CDDcd060086.09E-13343391No hitNo description
PfamPF014221.3E-4353370IPR000967Zinc finger, NF-X1-type
SMARTSM004384.4E-4353372IPR000967Zinc finger, NF-X1-type
PfamPF0142217411422IPR000967Zinc finger, NF-X1-type
SMARTSM0043857411441IPR000967Zinc finger, NF-X1-type
CDDcd060087.18E-9439482No hitNo description
PfamPF014221.0E-4449466IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1E-4449468IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9506524IPR000967Zinc finger, NF-X1-type
PfamPF0142212513523IPR000967Zinc finger, NF-X1-type
PfamPF014220.15559574IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6559588IPR000967Zinc finger, NF-X1-type
CDDcd060085.32E-5586635No hitNo description
PfamPF0142224590617IPR000967Zinc finger, NF-X1-type
SMARTSM004380.033597618IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.5E-4843887IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1044 aa     Download sequence    Send to blast
MSSKERSQQP HSRVPRRQEW IRRDVGGCSN PRKPKKGSSS NSREESNLPQ LLQEIQDKLV  60
KGAVECMICY DMVRRSAPIW SCSGCFSIFH LTCIKKWARA PISVDLSVEK NQGGFNWRCP  120
GCQSVQLTSS KDIRYLCFCG KRPDPPSDLY LMPHSCGEPC GKPLERDLQG DKELLCPHLC  180
VLQCHPGPCP PCKAFAPPRL CPCGKKNITT RCSDRQSVLT CGQRCQKLLQ CGRHRCQQIC  240
HLGPCHPCQV PINASCFCAQ KMEVILCGEM AVKGEIRADG GVFSCGSTCQ KKLNCGNHIC  300
IETCHPGSCG DCELLPSRIK TCCCGKTRLE EKRHSCLDPI PTCSQVCGKY LPCGIHHCEE  360
PCHAGDCSPC LVLVSQKCRC GSTSRTVECC KTKMENEKFT CERPCGQKKN CGRHRCSERC  420
CPLSNPNNIL NADWDPHFCQ LPCGKKLRCG QHACESLCHS GHCPPCLETI FTDLTCACGK  480
TSIPPPLPCG TPPPSCQLPC SVPQPCSHPA SHSCHFGDCP PCSMPIAKEC IGGHVVLRNI  540
PCGSKDIKCN KLCGKTRQCG LHACGRTCHL PPCDNLSAVP GIRASCGQTC GAPRRDCRHT  600
CTAPCHPSTP CPDTRCKFPV TITCSCGRIT ENVPCDAGGS CANYDADTVH EASIIQKLPV  660
LLQPVAANGK KVPLGQRKLM CNDDCAKLER KRVLADAFEI TAPNLDSLHF GENSVASELL  720
ADMLRRDSKW VLSVEERCKF LVLGKSRGNA HGPKVHVFCP MLKDKRDAVR VIAERWKLAV  780
NAAGREPKHF VVVHVTPKSR APARVLGFKG TTTVNVPLPP AFDPLVDMDP RLVVSFIDLP  840
MDADISALVL RFGGECELVW LNDKNALAVF NDPARAATAM RRLDHGTVYQ GAVVVVVPNV  900
GASVASSATN AWGGSGTMKG GALAALKSNP WKKDVIQEPG WREDAWGDEE WATGSANVKL  960
PIQKKEARIS ASVNPWSVLN QESSSSSSVA AIKIDGSRKH SESSVITKLE PRDGGSNLGG  1020
QPAGNFDALE ASDVVDDWEK ACE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.206530.0flower| leaf| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G055900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634196.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLK7L5480.0K7L548_SOYBN; Uncharacterized protein
STRINGGLYMA08G06040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1