PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G047400.3.p
Common NameGLYMA_08G047400, LOC100813694
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 365aa    MW: 41717.1 Da    PI: 4.9341
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G047400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.3e-35171082102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Flkk y+++ed++++++i+ws+ g+sfv++d ++f+ ++Lp+yFkh+nf+SF+RQLn+YgF+k++++          weF++++F +g+k
  Glyma.08G047400.3.p  17 FLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDC---------WEFANENFVRGQK 97 
                          9***************************************************************9987.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k+
  Glyma.08G047400.3.p  98 HLLKNIRRRKH 108
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3513106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5513106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVKSNENGSG SVSVPPFLKK CYDMVEDRNT DSIIRWSDGG DSFVISDITQ FSVTLLPTYF  60
KHNNFSSFIR QLNIYGFRKI DTDCWEFANE NFVRGQKHLL KNIRRRKHPH SADQQKALPQ  120
QDNCDEPSQE APYHGLWKEV ENLKLDKNSL TQELVKLRQH QESAENKLLL LSDRLQGMEK  180
HQQQMLSFLV MVVQSPGFMV QLLHPKENNW HLAESWNILD QDKQDDKPVA SDGMIIKYKP  240
PVGEKLKPVV PLSPGFEKQT EPELSAEGLK DLCVSSEFLK VLLDEKLSPL ENHSPFLLPD  300
LPDDGSWEQL FLGSPFMGNI QDSNKESEGH TNGGMEMEPT ISETPNENSR TFESMIVEME  360
KTRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25710619129Heat shock factor protein 1
5d5v_B3e-25710619129Heat shock factor protein 1
5d5v_D3e-25710619129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.336530.0cotyledon| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G047400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358700.0AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340358.10.0heat stress transcription factor 14
SwissprotQ9S7U58e-90HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLI1KQD50.0I1KQD5_SOYBN; Uncharacterized protein
STRINGGLYMA08G05220.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-92heat shock transcription factor A8