PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G046800.1.p
Common NameGLYMA_08G046800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 493aa    MW: 54810.6 Da    PI: 7.6784
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G046800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.8e-25203255154
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                          kpr+ W peLH++Fv+av++L   ++A+Pk+il+ m+v+gLt+++v+SHLQkYR
  Glyma.08G046800.1.p 203 KPRVIWLPELHRKFVKAVNKL-ALDQAVPKRILQEMNVPGLTRQNVASHLQKYR 255
                          79*******************.9******************************* PP
2Response_reg63.21.3e-21201271108
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vd +p+ +e +++ +++ +y ev+  ++++ al+l++ek+  +D+il+ + mp+m+G+e+l++  +e  ++p+iv++   +++++ +
  Glyma.08G046800.1.p  20 VLAVDNDPSTLEFIKNTCSQCKY-EVTIHTESPLALNLVREKKdrIDVILIEVHMPTMNGYEFLQHVSKEI-DVPVIVMSLDYSKDTVMK 107
                          799********************.***************888888**********************8877.8*******99999***** PP

                          HHHTTESEEEESS--HHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelv 108
                          a+++Ga df  Kp ++ +  
  Glyma.08G046800.1.p 108 AVQLGACDFWIKPLHEHQFK 127
                          *************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-2517142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-2717151No hitNo description
SMARTSM004488.3E-1718130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.83219134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-1820128IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.00E-1821133No hitNo description
PROSITE profilePS5129410.525200259IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-25201259IPR009057Homeodomain-like
SuperFamilySSF466893.58E-17201259IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-22203257IPR006447Myb domain, plants
PfamPF002497.7E-6208255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAKVSSDEKV LYQFPANLRV LAVDNDPSTL EFIKNTCSQC KYEVTIHTES PLALNLVREK  60
KDRIDVILIE VHMPTMNGYE FLQHVSKEID VPVIVMSLDY SKDTVMKAVQ LGACDFWIKP  120
LHEHQFKNMW THVSRKALNE NKIQKGFGSL EDDGRGRKLG NDNSEFASFD VVRDQSNGNS  180
SSREAAADVD ESEHEHCGPS TKKPRVIWLP ELHRKFVKAV NKLALDQAVP KRILQEMNVP  240
GLTRQNVASH LQKYRNFLKE KSRVTQTQEH TEMPLPNMVP GTIKNRVGAC ERHAEQALAE  300
CLSNITNNFP HPQPIRTQAD PSIYGARPPS NALAIQRSNA LVGSLQQQQQ QLSLINQQIS  360
PIISRQSSMM ISGNPASVFR NNDFGLLSPQ TSNPLSVAQI HGGNTTGGSR LNRYTATTTS  420
ITQQLQNSSL TSGAVRSFPA SVPPDGSLYQ ESPNISASGF NNQFFSTDID DNTTNEELNS  480
RNNPEKDHTL SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-18203259157Transcription factor LUX
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G046800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358700.0AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247378.10.0two-component response regulator ARR14-like
TrEMBLA0A445JA000.0A0A445JA00_GLYSO; Two-component response regulator ORR21
TrEMBLK7L4Z60.0K7L4Z6_SOYBN; Uncharacterized protein
STRINGGLYMA08G05165.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Representative plantOGRP1067657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-69response regulator 2