PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G046700.1.p
Common NameGLYMA_08G046700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 402aa    MW: 45440 Da    PI: 5.9133
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G046700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.87.8e-21142197155
              G2-like   1 kprlrWtp.eLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r+ W++ e H +F++a eqLGG++kA Pk+ile+mk +gLt+e+v+SHLQk R 
  Glyma.08G046700.1.p 142 KSRVIWAEeERHIKFLDAAEQLGGIDKAAPKRILEVMKDPGLTREQVASHLQKVRH 197
                          67999986268******************************************996 PP
2Response_reg58.15.2e-202711028109
                          EESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  28 eaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          + ++ +++ + ++++d   +D+il+D++mp+mdG+e+l++ir e  ++p+iv++  ++ ++  +a+k Ga d+  Kp ++++ ++
  Glyma.08G046700.1.p  27 VLETVKQMCNECHHQDrycVDVILIDVNMPNMDGHEFLQRIRMEI-DVPVIVMSLDDSTSTKMQAIKHGACDYWKKPLHEDQFRN 110
                          456677888888888899************************988.********************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.091116IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.42E-2315126IPR011006CheY-like superfamily
SMARTSM004481.1E-1116112IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.24E-1719109No hitNo description
PfamPF000722.9E-1628110IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.4E-2243144No hitNo description
PROSITE profilePS512949.623139200IPR017930Myb domain
SuperFamilySSF466893.23E-11141200IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-19142197IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-20145201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MATTDEEVPT QFPARLRVLA IDNDSTVLET VKQMCNECHH QDRYCVDVIL IDVNMPNMDG  60
HEFLQRIRME IDVPVIVMSL DDSTSTKMQA IKHGACDYWK KPLHEDQFRN MWMHVARKAW  120
NANRVDMKSG SLEEKPQANK GKSRVIWAEE ERHIKFLDAA EQLGGIDKAA PKRILEVMKD  180
PGLTREQVAS HLQKVRHQEK KKKNNSDEVR KSLPNTFQLT TTESSVSAYG KIERQAFAVN  240
GLVPCKTHTG IGTELTSDLM PKEEQWHAKQ GMTYDHPALS ICPPPHILNH HQSMMNVDEE  300
SGYGVWSPSA IHDTMRLRQV QEQEQQQMQM NFQSPCIFHD YTTTPASASA SASASSIPEQ  360
VQGGYFSVPN TLISPYSSRS DDSIHEESPE NFGYDDESSS N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G046700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358700.0AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634177.20.0two-component response regulator ORR21
TrEMBLK7L4Z50.0K7L4Z5_SOYBN; Uncharacterized protein
STRINGGLYMA08G05150.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3563322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.15e-41response regulator 14