PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G042100.1.p
Common NameGLYMA_08G042100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 313aa    MW: 36348.6 Da    PI: 7.6173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G042100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-171966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll +++  +G g+W++ a++ g++Rt+k+c++rw++yl
  Glyma.08G042100.1.p 19 RGPWTLEEDNLLSQYIFNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 66
                         89********************************************97 PP
2Myb_DNA-binding52.21.4e-1672115146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++++++++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.08G042100.1.p  72 RGNLTPQEQLIILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 115
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3711466IPR017930Myb domain
SuperFamilySSF466891.83E-2917113IPR009057Homeodomain-like
SMARTSM007179.0E-151868IPR001005SANT/Myb domain
PfamPF002499.3E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-222073IPR009057Homeodomain-like
CDDcd001671.64E-102166No hitNo description
PROSITE profilePS5129425.59567121IPR017930Myb domain
SMARTSM007175.1E-1571119IPR001005SANT/Myb domain
PfamPF002492.5E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2374120IPR009057Homeodomain-like
CDDcd001677.09E-1176115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSTSKSVSSS SEDDNELRRG PWTLEEDNLL SQYIFNHGEG RWNLLAKRSG LKRTGKSCRL  60
RWLNYLKPDV KRGNLTPQEQ LIILELHSKW GNRWSKIAQH LPGRTDNEIK NYWRTRIQKQ  120
ARHLKIYTDS REFQELVRRF WMPRLLQKAK ESSSSNMSIQ NQAIPMPFDY VSQHLTVGTI  180
PPWQGPCMNE AGPTYMDQHE QNSDSEHNNG SCISLSESAN IPKVPQHFGH TTITQFHALN  240
TNDFGTFTYE GYNVNNNVYE MDNFKTTTTW VAEDAQYPIG DCQMVGSNWV NNDFACNMWN  300
MDELWQFSKL QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25161214108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.180490.0cotyledon| flower| hypocotyl| leaf| meristem| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G042100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941810.0BT094181.1 Soybean clone JCVI-FLGm-18E16 unknown mRNA.
GenBankJX0902520.0JX090252.1 Glycine max ecotype Gwangan Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235837.20.0MYB transcription factor MYB184
TrEMBLI1KQ640.0I1KQ64_SOYBN; Myb transcription factor
STRINGGLYMA08G04670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-79myb domain protein 116