PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G041500.1.p
Common NameGLYMA_08G041500, LOC100776092
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 314aa    MW: 35222.5 Da    PI: 9.1294
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G041500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.3e-5351301128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGf+FhPtdeel+++yL +kv++  ++  ++++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat+sgyWk+tgkdk
  Glyma.08G041500.1.p   5 LPPGFKFHPTDEELITYYLLRKVSDVGFTS-KAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDK 93 
                          79*************************999.88***************988999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e++  +g l+g+kktLvfy grap+gek++Wvmheyrl
  Glyma.08G041500.1.p  94 EIFG-GGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRL 130
                          ****.*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-623151IPR003441NAC domain
PROSITE profilePS5100558.725151IPR003441NAC domain
PfamPF023651.3E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEKLPPGFK FHPTDEELIT YYLLRKVSDV GFTSKAVAVV DLNKSEPWDL PGKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TESGYWKTTG KDKEIFGGGV LIGMKKTLVF YMGRAPRGEK  120
SNWVMHEYRL ANKQPYRSSK EERVICRVFQ KSSAPKKPQQ TSSSQPSQES PTSMVNEFGD  180
VDLPNLNSIA NSSSSFTNNI AYNINGDPSN AVNTNMNLTM NWPSGFLNPN LSVNSLLLKA  240
SQLRNTYQQR EAATSSDHHF ATYVPQGFSH NNTIGTEHHL MTPNLSATSS SSKALEYSCV  300
PQQEQPFNMD SIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-55515720174NAC domain-containing protein 19
3swm_B9e-55515720174NAC domain-containing protein 19
3swm_C9e-55515720174NAC domain-containing protein 19
3swm_D9e-55515720174NAC domain-containing protein 19
3swp_A9e-55515720174NAC domain-containing protein 19
3swp_B9e-55515720174NAC domain-containing protein 19
3swp_C9e-55515720174NAC domain-containing protein 19
3swp_D9e-55515720174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G041500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150349e-96AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532503.10.0NAC domain-containing protein 92
TrEMBLI1KQ560.0I1KQ56_SOYBN; Uncharacterized protein
STRINGGLYMA08G04610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-98NAC domain containing protein 58