PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.08G041100.1.p | ||||||||
Common Name | GLYMA_08G041100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 372aa MW: 41544.3 Da PI: 6.1475 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.1 | 3.7e-08 | 15 | 58 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + ++++fC ++ +lC+ C + H+ H++v Glyma.08G041100.1.p 15 ARACDSCVSRRARWFCAADDAFLCHACDTLVHSAnqlasrHERV 58 578*****************************657788888876 PP | |||||||
2 | CCT | 66.8 | 5.9e-23 | 316 | 358 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ Glyma.08G041100.1.p 316 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 358 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.623 | 13 | 60 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-9 | 13 | 60 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.3E-7 | 15 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.74E-9 | 16 | 60 | No hit | No description |
PROSITE profile | PS51017 | 15.993 | 316 | 358 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.1E-18 | 316 | 358 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MRDMKDAGAL GGKTARACDS CVSRRARWFC AADDAFLCHA CDTLVHSANQ LASRHERVRL 60 QTASSKATTT TTHAWHSGFT RKARTPRHNN SKHFALQQRL KHEVLFNNTS VLPLVPELGG 120 EEQEPVVVDN DETEEQMLCR VPVFDPFDVR TDDLDSFSDM DFSEFAADVE GRLDKEDDEI 180 SAYVGGGEGV QGVLAKVKGE EEIDGDVACY LESVFDMISD DAFHWNNIES VVSDAREEKG 240 CVVPCDGGVS EQGGIKRDIF LRLNYDEVIT AWSSQGSSPW TTSNPPKFNS DYDFSLGLSG 300 VDGEGRSLRG HLDGGREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTC 360 FVGANAFPAY H* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 326 | 342 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.08G041100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM068900 | 0.0 | HM068900.1 Glycine max CONSTANS-like zinc finger protein (COL19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304589.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
Refseq | XP_028242819.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
Swissprot | Q8RWD0 | 2e-82 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | I1KQ52 | 0.0 | I1KQ52_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G04570.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 | Representative plant | OGRP802 | 16 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73870.1 | 2e-65 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.08G041100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|