PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G040900.1.p
Common NameGLYMA_08G040900, LOC102661155
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 166aa    MW: 18772.8 Da    PI: 9.872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G040900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-1591142153
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          s+y GVr+++ +g+++AeIrdp++ n+ rkr +lg+++t+ eAa      r+++
  Glyma.08G040900.1.p  91 SKYLGVRRRP-WGKYAAEIRDPRQkNC-RKRLWLGSYDTEIEAAMTFNVKRQEF 142
                          79********.**********988665.7**********99**97666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-1691137No hitNo description
SuperFamilySSF541719.15E-1391145IPR016177DNA-binding domain
PfamPF008471.5E-991139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-1792142IPR001471AP2/ERF domain
PROSITE profilePS5103217.34692155IPR001471AP2/ERF domain
SMARTSM003809.7E-1292158IPR001471AP2/ERF domain
PRINTSPR003674.0E-793104IPR001471AP2/ERF domain
PRINTSPR003674.0E-7118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASSQRQSAT KQGSPSSQKG NEKATSFGEC SWKTLRITYT DPDATDSSSD EENDKVSNGG  60
PKRRFIDITN PNWKDPNCKL SIRKGKRICS SKYLGVRRRP WGKYAAEIRD PRQKNCRKRL  120
WLGSYDTEIE AAMTFNVKRQ EFEREMALER GDNASVHSEG TAKED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G040900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634032.11e-120ethylene-responsive transcription factor CRF3
RefseqXP_025985301.11e-120ethylene-responsive transcription factor CRF3
RefseqXP_028244976.11e-120ethylene-responsive transcription factor CRF3-like
TrEMBLA0A445J9P31e-119A0A445J9P3_GLYSO; Ethylene-responsive transcription factor CRF5
TrEMBLK7L4W01e-119K7L4W0_SOYBN; Uncharacterized protein
STRINGGLYMA08G04550.21e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2657333
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-17cytokinin response factor 5