PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G036900.1.p
Common NameGLYMA_08G036900, LOC100785156
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 375aa    MW: 41028.8 Da    PI: 6.1487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G036900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.00052112491255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Glyma.08G036900.1.p 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249
                          6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.236199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.50E-6209253No hitNo description
SuperFamilySSF474593.14E-9209254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-6213253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMARNPN NWWNINTMRP PPPSQASAPF FSTPSNFLTP YNPTSLPLPS  60
WHDNNQELPE SWSQLLMSGM VSEEEKGGMC QIQSKKLENW EQQMLSQAPS APIVDVKQES  120
SVNSYVYGHG TNEEFQAAKP ITWSQIVPAS SPKSCVTSFS SSMLDFSNNN ADARPPPPDP  180
SSECNSSTAT GGAFKKARVQ PPTTQSTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEVINVYSP RSVDFCKRPR ESVNSDGTLD ALSLPYLGSG SGNMRHQQSV  300
QGEKNCIFPE DPGQLLNENC LKRKAASSEQ DSQEEANKDL RSRGLCLVPV SCTLQVGSDN  360
GADYWAPAFG GGFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.37830.0cotyledon| hypocotyl| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G036900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0944730.0BT094473.1 Soybean clone JCVI-FLGm-24H22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530507.10.0transcription factor bHLH68 isoform X1
RefseqXP_028242771.10.0transcription factor bHLH68-like isoform X1
SwissprotQ8S3D11e-101BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A445J9F10.0A0A445J9F1_GLYSO; Transcription factor bHLH68 isoform A
TrEMBLI1KPZ90.0I1KPZ9_SOYBN; Uncharacterized protein
STRINGGLYMA08G04110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]