PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G033900.1.p
Common NameGLYMA_08G033900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 161aa    MW: 17838.6 Da    PI: 9.5612
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G033900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45e-201357549
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +   rqvtfskRr+g +KKA+ELS+LCd+e+a+++fs  +k y +
  Glyma.08G033900.1.p 13 DPNMRQVTFSKRRTGPFKKANELSILCDVEIAIVVFSIGNKPYSF 57
                         5678*********************************98887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.577161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-23175IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-27160IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-221257IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGHRKIEIAI VKDPNMRQVT FSKRRTGPFK KANELSILCD VEIAIVVFSI GNKPYSFGHP  60
CVDVVATKFL QLQQAANSSN AKQIDAQGRN NPSNELGRKE GCGVTQLSQC KELQGSYLEF  120
QHGVKDYIDA IEVSECMILL AQEPMVGITK QVTTKRRKKN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-16184184MEF2 CHIMERA
6byy_B5e-16184184MEF2 CHIMERA
6byy_C5e-16184184MEF2 CHIMERA
6byy_D5e-16184184MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269|PubMed:20631316}.
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G033900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524404.11e-82agamous-like MADS-box protein AGL29
SwissprotO647038e-26AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLK7L4Q51e-115K7L4Q5_SOYBN; Uncharacterized protein
STRINGGLYMA08G03793.11e-116(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-28AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]