PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G020900.1.p
Common NameGLYMA_08G020900, LOC100776453
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 294aa    MW: 32589.4 Da    PI: 5.9951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G020900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-20107158156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          ++++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g+
  Glyma.08G020900.1.p 107 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAIVYDNAAIQLRGA 158
                          59********.**********84....34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-31107164No hitNo description
Gene3DG3DSA:3.30.730.101.5E-29108164IPR001471AP2/ERF domain
SMARTSM003804.5E-37108171IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-21108164IPR016177DNA-binding domain
PfamPF008472.1E-12108157IPR001471AP2/ERF domain
PROSITE profilePS5103223.182108165IPR001471AP2/ERF domain
PRINTSPR003674.5E-10109120IPR001471AP2/ERF domain
PRINTSPR003674.5E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MASSSIKHTH HLNRTKLFMK EETLLKKKHH YPKIIRIRVT DADATDSSSD DDEPSMSSTR  60
RRVKNFVNEI TIQGGGGGGG DVNVVSKKRR FKSGAGAPLC RRKTGAKKFR GVRQRPWGKW  120
AAEIRDPSRR VRLWLGTYDT AEEAAIVYDN AAIQLRGADA LTNFITPPPE NRKTGYCSGE  180
ESRNNDDLRS PTSVLGRCSV SEEAVTANDV FGGSSECEYS CVSESVFPIP NEVVFDFEST  240
LDMFDEGINN VVAETSIFLA EDLDLGFTSW HRECDNFQDI GGDLFVWDPL VAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20107164159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KKRRFK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278160.0leaf| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G020900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8730890.0EU873089.1 Glycine max cytokinin response factor 2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532429.10.0ethylene-responsive transcription factor CRF2
SwissprotQ9SUQ22e-53CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLI1KPI00.0I1KPI0_SOYBN; Cytokinin response factor 2
STRINGGLYMA08G02460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-47cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]