PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G018300.1.p
Common NameGLYMA_08G018300, LOC102667104
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 293aa    MW: 32991 Da    PI: 6.1815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G018300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30136195159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldD ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+ +tY+ eH h+
  Glyma.08G018300.1.p 136 LDDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSHLDPAVFLVTYTAEHSHP 195
                          58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-31122197IPR003657WRKY domain
SuperFamilySSF1182903.79E-26130197IPR003657WRKY domain
PROSITE profilePS5081132.374131197IPR003657WRKY domain
SMARTSM007741.3E-36136196IPR003657WRKY domain
PfamPF031061.3E-25137195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDEFACLRDW DLEAIVRGST GEAITMDDPN ADFSYFFSEQ DELLDSFPEF SETTRVLDDL  60
EELYKPFYPV LHPLSPHTIV TTSLPINMEP KQVIKASEQK VAALQGLKVP AAPKCKKSKK  120
SQNKSVVKQV TTAEGLDDAW AWRKYGQKPI KGSPYPRSYY RCSSSKGCLA RKQVERSHLD  180
PAVFLVTYTA EHSHPHPTRR NSLAGTTRKN NSLVPPPTTH RHQKNTNCSS KSIEVQQSMN  240
LKKEEDFTDW LDDDSAQFVD GWIPSSDLEK LIGLECQHFA LDGGFTDDFP HP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19123198180Disease resistance protein RRS1
5w3x_D4e-19123198180Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.499860.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO274269480.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G018300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-116AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584734.10.0probable WRKY transcription factor 29
RefseqXP_028246566.10.0probable WRKY transcription factor 29
TrEMBLA0A445J8L30.0A0A445J8L3_GLYSO; Putative WRKY transcription factor 29
TrEMBLI1KPF50.0I1KPF5_SOYBN; Uncharacterized protein
STRINGGLYMA08G02160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-34WRKY family protein