PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G009300.1.p
Common NameGLYMA_08G009300, LOC100785547
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BBR-BPC
Protein Properties Length: 318aa    MW: 35553.3 Da    PI: 9.7176
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G009300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind339.21.1e-10313171301
            GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdaki..rernlalsekkaavaerdmaflqrdkalaer 70 
                          mdd  ++e  r+k  +y+              ++ ++l   +++++ s++aer+a+i   e ++a+sek++a+a+rd a +qrd+ala+r
  Glyma.08G009300.1.p   1 MDDGHQHEnsRHKMeFYRgarslwntdsqhqvKEpNALV--MNKKIRSIMAERQAAIleIELETAISEKNEALAARDAAIQQRDEALAQR 88 
                          666555445799887888999999999876653335666..99**************76677889************************* PP

            GAGA_bind  71 nkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk 160
                          ++al+erdn+l+al+ ++ns   + p+g ++  g+k ++++ + + +++++ a+ ++++ + +a p++  ++ea ++++ k+++++k+  
  Glyma.08G009300.1.p  89 DNALLERDNALAALQSRNNS--VNFPFGGGIQCGSKRMHHSSN-HLSNMTEAAYSTKDMIIRDASPVTVIPSEAVNSHQAKRTKQNKVIN 175
                          ****************9998..66799999999******8887.669********************99999999999888888887766 PP

            GAGA_bind 161 ekkak...kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
                          +k +k   k+kk +e+ +++ ++e+  ++ ++e++++d++ln v++De+ +PvPvC+CtG++rqCYkWGnGGWqS+CCttt+S+yPLP+ 
  Glyma.08G009300.1.p 176 SKASKppcKVKKMGEDLNRQASSEG--TKIRSEWDKQDVGLNLVAFDETIMPVPVCTCTGIPRQCYKWGNGGWQSSCCTTTLSMYPLPQL 263
                          6655544688888888877777777..67************************************************************* PP

            GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          +++r+aRi+grKmS+++f++lL++L +eG+dls p+DLk++WA+HGtn+++ti+
  Glyma.08G009300.1.p 264 PNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK 317
                          *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.5E-981317IPR010409GAGA-binding transcriptional activator
SMARTSM012261.8E-1371317IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDGHQHENS RHKMEFYRGA RSLWNTDSQH QVKEPNALVM NKKIRSIMAE RQAAILEIEL  60
ETAISEKNEA LAARDAAIQQ RDEALAQRDN ALLERDNALA ALQSRNNSVN FPFGGGIQCG  120
SKRMHHSSNH LSNMTEAAYS TKDMIIRDAS PVTVIPSEAV NSHQAKRTKQ NKVINSKASK  180
PPCKVKKMGE DLNRQASSEG TKIRSEWDKQ DVGLNLVAFD ETIMPVPVCT CTGIPRQCYK  240
WGNGGWQSSC CTTTLSMYPL PQLPNKRHAR IGGRKMSGSV FTRLLSRLVS EGHDLSIPLD  300
LKEYWARHGT NRYITIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.597050.0cotyledon| meristem| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G009300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532442.10.0protein BASIC PENTACYSTEINE4
RefseqXP_003532443.10.0protein BASIC PENTACYSTEINE4
RefseqXP_028245019.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_028245020.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-126BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A445J8460.0A0A445J846_GLYSO; Protein BASIC PENTACYSTEINE4 isoform A
TrEMBLI1KP400.0I1KP40_SOYBN; Uncharacterized protein
STRINGGLYMA08G01240.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-129basic pentacysteine 4