PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G008100.1.p | ||||||||
Common Name | GLYMA_08G008100, LOC100780892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 852aa MW: 94421.6 Da PI: 6.8583 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 154 | 255 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F Glyma.08G008100.1.p 154 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 241 99*****************************63.4445569************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ Glyma.08G008100.1.p 242 -RGENGELRVGVRRA 255 .449999*****996 PP | |||||||
2 | Auxin_resp | 116.8 | 1.9e-38 | 280 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk+++++GmRfkm+fe+e+++e+r++Gt+vg++d+d+ rWp+SkWrsLk Glyma.08G008100.1.p 280 AWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLK 362 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 150 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-40 | 150 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-20 | 152 | 254 | No hit | No description |
Pfam | PF02362 | 7.1E-21 | 154 | 255 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.434 | 154 | 256 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-22 | 154 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-36 | 280 | 362 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.2E-12 | 714 | 815 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.819 | 727 | 809 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.32E-10 | 729 | 804 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MATSEVSIKG NSVNGKGDNS SGDARNSGGE AQNASSSSSS ARDAEAALYR ELWHACAGPL 60 VTVPRERERV FYFPQGHIEQ VEASTNQVAE QHMPVYDLPP KILCRVINVM LKAEPDTDEV 120 FAQVTLLPEP NQDENAVEKE GPPAPPPRFH VHSFCKTLTA SDTSTHGGFS VLRRHADECL 180 PPLDMSKQPP TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF 240 LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAILTGTMF TVYYKPRTSP 300 AEFIVPYDQY MESLKNNYTI GMRFKMRFEG EEAPEQRFTG TIVGIEDADT KRWPKSKWRS 360 LKVRWDETSN IPRPERVSQW KIEPALAPLA LNPLPMPRPK RPRSNVVPSS PDSSVLTREA 420 SKVSVDPLPT SGFQRVLQGQ ELSTLRGNFA ESNESDTAEK SGVWPPATDD EKIDVSTSRR 480 YGSDSWMSMG RHEPTYPDLL SGFGAHGDHS SHPSFVDQNG PVANLSRKHL LDREGKHNVL 540 SPWPGVPSSL SLNLLDSNLK GSAQGGDTAY QVRGNLRYSS AFGEYPVLHG HKVEHSHRSF 600 LMPPPPSTQY ESPRSRELLS KPISGKPCEV SKLKDSDCKL FGISLLSSRP IASEPSLSQR 660 NVTSESVGHM HTASHHQRAI ENDQKSEHSR GSKPADGLLI DDHEKVLQTS QPHLKDVQAK 720 SHSGSARSCT KVHKKGIALG RSVDLTKFSD YGELITELDQ LFEFGGELTS PQKDWLIVYT 780 DNEGDMMLVG DDPWQEFVAM VRKIYIYPKE EIQKMSPGTL SSKNEENQSA SEGAADAQEI 840 ECQLNHSSSD T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 47 | 384 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 47 | 384 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 47 | 384 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-176 | 47 | 384 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-176 | 47 | 384 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.2563 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G008100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235431 | 0.0 | AC235431.1 Glycine max strain Williams 82 clone GM_WBb0144O21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003532359.1 | 0.0 | auxin response factor 2B | ||||
Refseq | XP_028242517.1 | 0.0 | auxin response factor 2B-like | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A445J819 | 0.0 | A0A445J819_GLYSO; Auxin response factor | ||||
TrEMBL | I1KP28 | 0.0 | I1KP28_SOYBN; Auxin response factor | ||||
STRING | GLYMA08G01100.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3281 | 33 | 66 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G008100.1.p |
Entrez Gene | 100780892 |