PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G007800.1.p
Common NameGLYMA_08G007800, LOC100798417
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 333aa    MW: 37502.8 Da    PI: 9.7487
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G007800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.35.6e-2046138185
             trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                          rWt+qe+l+Lie ++ +e+  +  +        +  p+W+ vs+ +++rg++r+++qC+++w nl ++++kik++e++ ++es+s + + 
  Glyma.08G007800.1.p  46 RWTRQETLVLIESKKMVESGEQVCRfrsasgyvQTDPKWDMVSSLCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESSVREESESFWIMR 135
                          8*************9777665532223345788*********************************************999999888877 PP

             trihelix  83 dql 85 
                          +++
  Glyma.08G007800.1.p 136 NDV 138
                          765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-443113IPR009057Homeodomain-like
PfamPF138372.7E-1145134No hitNo description
PROSITE profilePS500906.58646111IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAQDSEKICE GASESAITPV IGTQAPESEP KSTPTTQRIK ATRHPRWTRQ ETLVLIESKK  60
MVESGEQVCR FRSASGYVQT DPKWDMVSSL CQQRGVKRGA VQCRKRWGNL LTDFRKIKKW  120
ESSVREESES FWIMRNDVRK EKKLPGFFDS VVYNVLDGGV CTTVAFPLTL VKMAPNKVEI  180
LDGEKMGWST EEENMETNIT GNMINGFPKT PKKGIAGSLK RTPILTLPTP EKVQQQPSYQ  240
GNYDPGIQRE PIFQEGMGYK RKRLSSDISE DSTDFNNITK LLRRNSDILK AHIGTQNINY  300
QLARDQQKQQ TDIIVAALGK LTDALTKIAD KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G007800.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354310.0AC235431.1 Glycine max strain Williams 82 clone GM_WBb0144O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006584687.10.0trihelix transcription factor ASR3
RefseqXP_028242505.10.0trihelix transcription factor ASR3-like
TrEMBLA0A0R0IF480.0A0A0R0IF48_SOYBN; Uncharacterized protein
STRINGGLYMA08G01050.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-63Trihelix family protein