PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G005400.1.p
Common NameGLYMA_08G005400, LOC100791004
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 219aa    MW: 24343.2 Da    PI: 7.6286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G005400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49.4e-201562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEdell+++++++G g+Wk+I++  g+ R++k+c++rw +yl
  Glyma.08G005400.1.p 15 KGPWSKEEDELLINYINLHGQGNWKSIPKAAGLLRCGKSCRLRWTNYL 62
                         79******************************99************97 PP
2Myb_DNA-binding513.4e-1668113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g++T+eE  l+++++ +lG++ W+ Ia  ++ gRt++++k++w ++l
  Glyma.08G005400.1.p  68 KGNFTEEESNLIIHLHSLLGNK-WSQIATSLP-GRTDNEIKNYWKSHL 113
                          79********************.*********.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.341062IPR017930Myb domain
SuperFamilySSF466893.34E-3114109IPR009057Homeodomain-like
SMARTSM007179.4E-171464IPR001005SANT/Myb domain
PfamPF002494.3E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-251669IPR009057Homeodomain-like
CDDcd001673.58E-141762No hitNo description
PROSITE profilePS5129426.28963117IPR017930Myb domain
SMARTSM007178.2E-1667115IPR001005SANT/Myb domain
PfamPF002494.2E-1568113IPR001005SANT/Myb domain
CDDcd001675.94E-1270113No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2670116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGRTPCSDKE QINKKGPWSK EEDELLINYI NLHGQGNWKS IPKAAGLLRC GKSCRLRWTN  60
YLRPDLKKGN FTEEESNLII HLHSLLGNKW SQIATSLPGR TDNEIKNYWK SHLKRYLYAL  120
GIDPVTHKPF KEDTNTTSTP PNNSMATTTS TIPRIYYFNV FLNSKVHISA DDDYSADGGA  180
DSNSSSGVTI EEASPQVNLE LSIAPPSQPH EDAASVKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G005400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532377.11e-162myb-related protein 330
RefseqXP_028243204.11e-162myb-related protein 330-like
TrEMBLA0A445J7Y41e-161A0A445J7Y4_GLYSO; Transcription factor MYB7
TrEMBLK7L4951e-161K7L495_SOYBN; Uncharacterized protein
STRINGGLYMA08G00810.21e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.18e-69myb domain protein 7