PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G272800.1.p
Common NameGLYMA_07G272800, LOC100815450
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 675aa    MW: 75123.5 Da    PI: 6.2793
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G272800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22124224198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F 
  Glyma.07G272800.1.p 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLAAGDAFIFL 211
                          99****************************964333..4459************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            + +++el+v+v+r
  Glyma.07G272800.1.p 212 --RGENGELRVGVRR 224
                          ..449999*****98 PP
2Auxin_resp105.75.3e-35250333183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldp.vrWpnSkWrsLk 83 
                          a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++  ++k+svGmRfkm+fe+++ +err+sGt+vgv d ++ + Wp+S+WrsLk
  Glyma.07G272800.1.p 250 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSsSVWPDSEWRSLK 333
                          789***************************************************************99876157********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-41116239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-42120253IPR015300DNA-binding pseudobarrel domain
CDDcd100177.95E-20122224No hitNo description
PROSITE profilePS5086311.42124226IPR003340B3 DNA binding domain
SMARTSM010191.3E-21124226IPR003340B3 DNA binding domain
PfamPF023622.4E-20124224IPR003340B3 DNA binding domain
PfamPF065076.3E-33250333IPR010525Auxin response factor
PfamPF023095.7E-7542590IPR033389AUX/IAA domain
PROSITE profilePS5174528.002550643IPR000270PB1 domain
SuperFamilySSF542772.6E-11552627No hitNo description
PfamPF023093.1E-6597640IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MASTLKSGGI HTGAINDDLY KELWHACAGP LVTLPREGER VYYFPQGHME QLEASMYEGL  60
EQQMPSFNLP SKILCKVVNV HLRAEPETDE VYAQITLLPE ADQSEVTSPD DPLPESPRVK  120
IHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH GNEWHFRHIF  180
RGQPKRHLLT TGWSVFVSSK KLAAGDAFIF LRGENGELRV GVRRVMRQQS NVPSSVISSH  240
SMHLGVLATA SHAIATGTLF SVFYKPRTSR SEFIVSVNKY LEVQSHKLSV GMRFKMRFEG  300
DEIPERRFSG TIVGVGDNKS SSVWPDSEWR SLKVQWDEPS SILRPDRVSS WELEPLVSTT  360
LANSQPTQRN KRARPLILPS TMPDSSLQGI WKSSVESTSF SYCDPQQGRG LYPSPKFNSS  420
ATNFIGFSGN SSVGSPSNKS IYWSNRMENN LESISAIALK EAGEKRQGTG NGCRLFGIQL  480
LENSNAEGNL QTVTLSGRVG DDRSVPSLDA ESDQHSEPSN ANRSDIPSVS CDAEKSCLQS  540
PQESQSKQIR SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEDMFNIKTE LCGSLKKWQV  600
VYTDNEDDMM MVGDDPWDEF CSVVRKIFIY TAEEVKKLSP KIRLPMNEKV NPSKQDSEAI  660
VNPEDQSSNM GPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013581357Auxin response factor 1
4ldw_A0.013581357Auxin response factor 1
4ldw_B0.013581357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.30010.0cotyledon| flower| hypocotyl| leaf| pod| root| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G272800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528726.10.0auxin response factor 1
RefseqXP_028242023.10.0auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLI1KNS10.0I1KNS1_SOYBN; Auxin response factor
STRINGGLYMA07G40270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]