PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G271900.1.p

Common Name

GLYMA_07G271900, LOC100805652

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 284aa MW: 31392.4 Da PI: 8.1367

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G271900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.5	5.7e-32	65	121	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC CHRnFHR+eve Glyma.07G271900.1.p 65 KVVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACHCHRNFHRKEVEG 121 679************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-25	67	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-28	67	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-30	68	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.33	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.1E-29	203	272	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.1E-17	206	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.5E-26	210	266	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MELSSQEGEI PIPINSSTTY GHGNGHGHGL MIHHDHNHII SSTAPSNGIP TMQQEEDHGL 60 GSYKKVVRYR ECLKNHAAAM GGNATDGCGE FMPSGEEGTI EALNCSACHC HRNFHRKEVE 120 GEPSCDYHHL NINRRRHILG PHKNLLPPEA LGYPTAARSV PPHQMIMPYN IGGIGHHLPS 180 ESDEQEDGGG GGGMVQLSSR PISSQQQLVK KRFRTKFSQE QKDKMLNFAE KVGWKIQKQE 240 ESVVQQFCQE IGVKRRVLKV WMHNNKHNLA KKNPPTTAAP PPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-23	211	268	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G271900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006584131.1	0.0	zinc-finger homeodomain protein 4
Refseq	XP_028242012.1	0.0	zinc-finger homeodomain protein 4-like
Swissprot	O64722	2e-77	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A445K2G3	0.0	A0A445K2G3_GLYSO; Zinc-finger homeodomain protein 3
TrEMBL	I1KNQ9	0.0	I1KNQ9_SOYBN; Uncharacterized protein
STRING	GLYMA07G40190.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-75	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Glyma.07G271900.1.p
Entrez Gene	100805652

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]