PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G271100.1.p
Common NameGLYMA_07G271100, LOC100812779
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 401aa    MW: 45500.1 Da    PI: 7.2416
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G271100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.5e-50431682128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  Glyma.07G271100.1.p  43 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 131
                          79***************************.89***************8778899************************************ PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  Glyma.07G271100.1.p 132 IRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 168
                          ***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.80442189IPR003441NAC domain
SuperFamilySSF1019413.4E-5542188IPR003441NAC domain
PfamPF023654.0E-2544168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAIAAANSSP TMSLSHSQSQ EDATTNDNKP VVVDDDHEHD MVMPGFRFHP TEEELVEFYL  60
RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS  120
GYWKATGADR MIRTENFRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERYQKAE  180
ISLCRVYKRA GVEDHPSLPR CLPTRPSSSS RASSDHINNN KSTKHNEMVQ HHNINMGFMG  240
QSKPPTTEHI VDKINESEAS SDVNTTLGLS KYNAYRAATM ALPVVPMDEE ALMMMQQSKQ  300
AAAAAAHVPT IFSAGPSSSN NSGVVNMDDL NRLMSYQHQY YNVQSQSHPN QFSTLLMQPS  360
PIVSLSSLPN PLPPTFSDRL WDWNPIPESP SQEYSNISFK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-554418919165NO APICAL MERISTEM PROTEIN
1ut4_B1e-554418919165NO APICAL MERISTEM PROTEIN
1ut7_A1e-554418919165NO APICAL MERISTEM PROTEIN
1ut7_B1e-554418919165NO APICAL MERISTEM PROTEIN
4dul_A1e-554418919165NAC domain-containing protein 19
4dul_B1e-554418919165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.78700.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G271100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528722.10.0NAC domain-containing protein 35
RefseqXP_028242007.10.0NAC domain-containing protein 35-like
SwissprotQ9ZVP81e-113NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A0B2S4L30.0A0A0B2S4L3_GLYSO; NAC domain-containing protein 35
TrEMBLI1KNQ20.0I1KNQ2_SOYBN; Uncharacterized protein
STRINGGLYMA07G40140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-111NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]