PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G262700.1.p | ||||||||
Common Name | GLYMA_07G262700, LOC100127382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 518aa MW: 55868.1 Da PI: 6.7883 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 268 | 326 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Glyma.07G262700.1.p 268 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILTTTYEGTHNHP 326 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-33 | 252 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-27 | 260 | 328 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.977 | 262 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-36 | 267 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 269 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MFMEWSLTLD SSHSSSSTTN HNMFPTLGFP VNLSPSSDHN RTVLGEVDFF SGARNISSSH 60 TNNDHGTPLK CDPHVNTGLQ LLTANAGSDQ STVDDGASSD AEDKLVKITE LARLQEDLRR 120 MNAENQKLKE MLSHVSSNYA NLQMHLAAVL QQQHNQRTEN TEQEVVQGKA EERKHGGMVP 180 PRQFLDLVPS GTTEIDDQVS NSSLGERTRS TTPPSCNKND DKDKKETTDI PHSGKLLNHT 240 TDPSTSPEAA MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP 300 VRKQVQRCAE DRTILTTTYE GTHNHPLPPA AMAMASTTAA AASMLLSGSM TSADGIMNPN 360 LLTRAILPCS SMATLSASAP FPTVTLDLTH NQNAFQNYQR PQTPLFPSQP QDFIAGSTPP 420 QLPQLIAQAL YNQSKFSGLQ LSQDVGPNNS QAPRPFLQPS QQVSLTDTIS AITADPNFTA 480 ALVSAISSII GGANPNNNSA NNSSSNPNVI NSATINQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-21 | 254 | 330 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22513 | 0.0 | flower| hypocotyl| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G262700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019573 | 0.0 | EU019573.1 Glycine max WRKY34 (WRKY34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528693.2 | 0.0 | WRKY transcription factor 6 | ||||
Refseq | XP_028241880.1 | 0.0 | WRKY transcription factor 6-like | ||||
Swissprot | Q9C519 | 1e-139 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0R0JEE2 | 0.0 | A0A0R0JEE2_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445K1Y2 | 0.0 | A0A445K1Y2_GLYSO; WRKY transcription factor 6 | ||||
STRING | GLYMA07G39250.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-121 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G262700.1.p |
Entrez Gene | 100127382 |