PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G250000.1.p
Common NameGLYMA_07G250000, LOC100789405
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 485aa    MW: 51066.3 Da    PI: 8.2667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G250000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.57.9e-124974227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C yG rC+F+H++
  Glyma.07G250000.1.p 49 DEADCIYYLRTGFCGYGTRCRFNHPR 74
                         6799********************96 PP
2zf-CCCH37.92.9e-1296120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++rtG Ck+G++Ck++H++
  Glyma.07G250000.1.p  96 QPVCQYYMRTGSCKFGASCKYHHPR 120
                          689********************96 PP
3zf-CCCH34.73e-11142166327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++ +tG+Ck+G++CkF+H++
  Glyma.07G250000.1.p 142 QKECSYYVKTGQCKFGATCKFHHPQ 166
                          679********************97 PP
4zf-CCCH34.14.6e-11307332227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG Ck+G+ C+++H+p
  Glyma.07G250000.1.p 307 DQPECHHYMKTGDCKFGPLCRYHHPP 332
                          689*********************97 PP
5zf-CCCH30.85.1e-10354378327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++C ++ + G Ck+G+ CkF H++
  Glyma.07G250000.1.p 354 APPCTHYTQRGVCKFGSACKFDHPM 378
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-44774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8544775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-64876IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-94974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77993121IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-793120IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-1096120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-696120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-598120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652139167IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6140167IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-9142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422305333IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5308334IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69351379IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7354378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5355381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5356376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MERYGRASEG SQSDPSPEWT VAADVDAGLE ESSWQLGLPG AESYPMRPDE ADCIYYLRTG  60
FCGYGTRCRF NHPRDRAAVI GAAPRTGGEF PERVGQPVCQ YYMRTGSCKF GASCKYHHPR  120
QVPGTATPVP LNYYGYPLRV GQKECSYYVK TGQCKFGATC KFHHPQPAGV QVLAPSPVPP  180
VSPLPVPVPS PMYPTVHPPS GPSQQQYGVL VARPPMLPGS VVQGPYGPMV VSPTMVPFSG  240
WSPYQAPATN PLLPSSTTSN VGSTQLYGIT QLPSSAATYT GPYQPSGSSI GPSGASQKEH  300
PFPERPDQPE CHHYMKTGDC KFGPLCRYHH PPDKSAPKAN VTLSPVGLPL RPGAPPCTHY  360
TQRGVCKFGS ACKFDHPMGS LSYSPSASSL ADMPVAPYPV GSSIGTLALS SLSSELRPEL  420
GAGSNKESVA SRMSSMSTST GSVGLTLSSV GPISHSSTQP SAQSSSSPET TSATTSSTVS  480
HTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.246000.0cotyledon| flower| leaf| seed coat| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G250000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-150AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529584.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_028241716.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-155C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445K1E10.0A0A445K1E1_GLYSO; Zinc finger CCCH domain-containing protein 32
TrEMBLI1KN180.0I1KN18_SOYBN; Uncharacterized protein
STRINGGLYMA07G37980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-141C3H family protein