PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G243000.2.p | ||||||||
Common Name | GLYMA_07G243000, LOC100527933 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 131aa MW: 13741.5 Da PI: 10.1916 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.2e-19 | 39 | 72 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ CgttkTplWR gp g+k+LCnaCG++ rkk+ Glyma.07G243000.2.p 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 72 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.7E-13 | 33 | 83 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.611 | 33 | 69 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-13 | 33 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.4E-16 | 37 | 73 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.55E-13 | 38 | 73 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 39 | 64 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.6E-17 | 39 | 73 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MVDPTGKGSE IEVEDSNSNP NAPSSGNSPS SNNEQKKTCA DCGTTKTPLW RGGPAGPKSL 60 CNACGIRSRK KKRAILGINK GSNEDGRKGK RTGGALGKEV LLHRSHWKKL GEEEKAAVLL 120 MSLSYGSVYA * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9099 | 0.0 | flower| hypocotyl| pod| root| stem| vegetative bud |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 6847991 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G243000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092836 | 0.0 | BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235841.1 | 4e-90 | uncharacterized protein LOC100527933 | ||||
Refseq | XP_028241630.1 | 4e-90 | GATA transcription factor 15-like | ||||
Swissprot | Q9FJ10 | 6e-33 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A445K152 | 1e-88 | A0A445K152_GLYSO; GATA transcription factor 16 isoform B | ||||
TrEMBL | C6T5X2 | 1e-88 | C6T5X2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G37190.1 | 6e-74 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 6e-34 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G243000.2.p |
Entrez Gene | 100527933 |
Publications ? help Back to Top | |||
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