PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G243000.1.p | ||||||||
Common Name | GLYMA_07G243000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 159aa MW: 16789.1 Da PI: 10.0945 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 30.1 | 6.6e-10 | 39 | 58 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ CgttkTplWR gp g+k Glyma.07G243000.1.p 39 CADCGTTKTPLWRGGPAGPK 58 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.3E-4 | 33 | 111 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.578 | 33 | 56 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.09E-5 | 33 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-7 | 37 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.61E-8 | 38 | 101 | No hit | No description |
Pfam | PF00320 | 2.3E-7 | 39 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MVDPTGKGSE IEVEDSNSNP NAPSSGNSPS SNNEQKKTCA DCGTTKTPLW RGGPAGPKVS 60 SPSISQIAPR GVKPTLDLTL CYPFFQSLCN ACGIRSRKKK RAILGINKGS NEDGRKGKRT 120 GGALGKEVLL HRSHWKKLGE EEKAAVLLMS LSYGSVYA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9099 | 1e-122 | flower| hypocotyl| pod| root| stem| vegetative bud |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 6847991 | 1e-122 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G243000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-131 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235841.1 | 1e-74 | uncharacterized protein LOC100527933 | ||||
Refseq | XP_028241630.1 | 1e-74 | GATA transcription factor 15-like | ||||
Swissprot | Q9FJ10 | 1e-26 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A445K1E5 | 1e-111 | A0A445K1E5_GLYSO; GATA transcription factor 16 isoform A | ||||
TrEMBL | I1KMU4 | 1e-111 | I1KMU4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G37190.1 | 1e-112 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 9e-28 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G243000.1.p |
Publications ? help Back to Top | |||
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