PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G235900.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 326aa    MW: 36612.5 Da    PI: 6.253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G235900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ l+++v+ +G g+W+t a   g++Rt+k+c++rw++yl
  Glyma.07G235900.1.p 23 RGPWTVDEDLTLINYVATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 70
                         89********************************************97 PP
2Myb_DNA-binding50.54.9e-1676119146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.07G235900.1.p  76 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.071874IPR017930Myb domain
SuperFamilySSF466897.11E-3120117IPR009057Homeodomain-like
SMARTSM007173.4E-142272IPR001005SANT/Myb domain
PfamPF002493.0E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-222477IPR009057Homeodomain-like
CDDcd001676.14E-112570No hitNo description
PROSITE profilePS5129418.37875125IPR017930Myb domain
SMARTSM007172.9E-1475123IPR001005SANT/Myb domain
PfamPF002498.1E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2278124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDGKGARSSN TLLSSEDEMD LRRGPWTVDE DLTLINYVAT HGEGRWNTLA LSAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKQFKDT MRYIWMPRLV ERIQATAAAS ATTTVTATTA TNNAYTYGSN  180
LNNNKFEVHD HKGKMGLTDP SVMNNDLVGS HVTQSYTPEN SSTGASSSDS FGTQVSAISD  240
LTEYYTVTVS GNNNNTNSAD YYQPSQISYS DSCITSPSGL FPQGLDFQSM DPNTPWNMQS  300
GDSSDSFWNV ESMLFLEQQL MNDNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.266950.0leaf| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G235900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937110.0BT093711.1 Soybean clone JCVI-FLGm-17N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239915.10.0uncharacterized protein LOC100791349
RefseqXP_028241554.10.0transcription factor MYB108-like
SwissprotQ10MB47e-90MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0B2R8U40.0A0A0B2R8U4_GLYSO; Myb-related protein 305
TrEMBLC6T8B50.0C6T8B5_SOYBN; Uncharacterized protein
STRINGGLYMA07G36430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-85myb domain protein 108
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]