PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G234200.2.p | ||||||||
Common Name | GLYMA_07G234200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 1003aa MW: 110762 Da PI: 7.683 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.5 | 2.4e-40 | 161 | 238 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Glyma.07G234200.2.p 161 VCQVQDCRADLSNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 238 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.0E-32 | 156 | 223 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.966 | 159 | 236 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-37 | 160 | 241 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.4E-29 | 162 | 235 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 1.7E-6 | 278 | 302 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.36E-6 | 767 | 887 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.7E-6 | 774 | 885 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.10E-7 | 774 | 884 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1003 aa Download sequence Send to blast |
MEAEFGGKNQ YLYGPVVSGM KKAVVGNGKR SLEWDLNDWR WDGDLFTAQP LNSVPSDCRG 60 CQFFPPHPEI PAKNANPSTT NLSSSVFILG EGKRELEKRR RDVIAEGEGE GLNDEGGSLS 120 LNLGGQGYPL MLEEEEKSGK KTKVIGTNTT TTTTTTSNRA VCQVQDCRAD LSNAKDYHRR 180 HKVCDVHSKA TMALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPDV 240 SVVNEGSLND QRDSNYLLMS LLRILTNLHS NGSDHTRNQD ILSHLLKNLA SLAGPNNGGR 300 LAPLLEESKG LVNAGTHGAD HDKPNLNSNA PEASRPSSSI KTDNGIIAQD PPMSVVQYET 360 PANGMTQKCI ASGDGVGNLK PPSGPLLSNN TVENHKKPYP PVASGMGFID HASWLQCDSL 420 KSSPPQTSRN SDSTSTQSPS SSSGEAQSRT DRIVFKLFGK DPSDFPLLLR SQILNWLSRS 480 PTEIESYIRP GCIILTIYLR LEKSAWEELY CNLGSSLRKL LAASNDSFWR TGWVYARVQH 540 AVAFLYNGQV VLDVPLRLKS PQHCMISCIN PLAVPASASA QFIVKGFNLS QSSTRLHCAL 600 EGKYLVHASC HDLIGGADAP IQHLSFSCQI PSVTGRGFIE VEDHGLSSCS FPFIVAEQEV 660 CSEICKLENV IEEAETTDDI QIKNQHMEEK TQALDFLQEM GWLLHRSHVK FKLGSMAPFH 720 DLFQFNRFAW LVDFSMDHGW CAVMKKLLDI IFEGGVDAGE HASIELALLN MGLLHRAVKR 780 NCRPMVELLL RFVPVKTSDG ADSEMKQVAE APDRFLFRPD TVGPAGLTPL HVAASMSGSE 840 NVLDALTNDP RMVGIEAWKS ARDSTGLTPN DHACLRGYYS YIQLVQNKTN KKGERQHLVD 900 IPGTVVDSNT TQKQSDGNRT CRVPSLKTEK IETTAMPRQC RACQQKVAYG GMKTAMVYRP 960 VMLSMVTIAV VCVCVALLFK SSPRVYYVFQ PFNWESLEYG AM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 153 | 235 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27439 | 0.0 | flower| meristem| pod| root| seed coat| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G234200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528599.1 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0R0JFS4 | 0.0 | A0A0R0JFS4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G36180.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G234200.2.p |