PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G228900.1.p
Common NameGLYMA_07G228900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 353aa    MW: 40154.1 Da    PI: 7.3614
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G228900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.13.1e-20953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+  rq t++kR+ngi+KKA E+S+LCd+++ +++f+++gk
  Glyma.07G228900.1.p  9 KRLENTNGRQATYAKRKNGIMKKAAEISILCDIDIILLMFAPNGK 53
                         689****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.226153IPR002100Transcription factor, MADS-box
CDDcd001201.05E-22254No hitNo description
SuperFamilySSF554552.09E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-16323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-163859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.806107203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAEISILCD IDIILLMFAP NGKPSLCRGR  60
HSNFEEVIAK FGQLTPQERA KRKLETLEAL KKTFKKLDHD VNVQEFMGTS SQTIEDLSNQ  120
ARLLQTQISE THKRLSHWTE FDKISNVDQL GQMENSLRES LNQIRTRKEN IKKQQQLMSL  180
QCNNQFNEMN IPFRMSVEQQ LQPLSWIAND DNHNIVLPED SNMFLHKDVE GSTSSSFGSH  240
VSYLGSSIKN DMSNSAQENG VLSDMSNTAP MRLQLNGHFP YLPYNFNLPN NLKFQPTAEI  300
NPYENPVDYH VNGGFEAPRS GYDSNNHHDW ASTSGPCGVT MFDEQLYAQQ PN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G228900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528580.10.0agamous-like MADS-box protein AGL30
RefseqXP_028242338.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-106AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0R0JCU00.0A0A0R0JCU0_SOYBN; Uncharacterized protein
TrEMBLA0A445K0F50.0A0A445K0F5_GLYSO; Agamous-like MADS-box protein AGL30
STRINGGLYMA07G35610.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Representative plantOGRP59461119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-87AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]