PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G228700.1.p
Common NameGLYMA_07G228700, LOC100810632
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 437aa    MW: 48353.2 Da    PI: 6.506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G228700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16104149147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Glyma.07G228700.1.p 104 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 149
                          899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17156199146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Glyma.07G228700.1.p 156 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 199
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1799150IPR017930Myb domain
SMARTSM007172.9E-14103152IPR001005SANT/Myb domain
PfamPF002499.1E-16104149IPR001005SANT/Myb domain
SuperFamilySSF466898.24E-28104197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-25105157IPR009057Homeodomain-like
CDDcd001673.29E-13107148No hitNo description
PROSITE profilePS5129426.929151205IPR017930Myb domain
SMARTSM007171.8E-14155203IPR001005SANT/Myb domain
PfamPF002492.6E-14156198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20158204IPR009057Homeodomain-like
CDDcd001671.00E-11158198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGMVYADMDS LSLCSNYGVV SSHQDNCYVS NGGTNWGFPF MRECPNFEDH PNNSDDVAEE  60
GKGSYSSGED SDKVNHNANN FNDENSPNEN SNSGGSGHSK LCARGHWRPA EDSKLKELVA  120
LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFS EEEEERLMQA HRIYGNKWAM  180
IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRLSQSS SVYRRVEELN TTTTTSSTLV  240
SRNTAAAEQQ PPPPYCLNLP NNGGLANNIN MPSSPYAATP FHGGVVAVAP SSGVEFGLLN  300
GSPHMTAAKE AFSTPKLVPH IALYPQQTPL DFFSGVRSSN DMVGEYFGQN DHHQPSFGFN  360
PQYPQYVMLM QQHQQNNHNY GFSNSTAQIL GHSEASLSSV AAEHRDHQNV SSDQCPPDAT  420
TTIPPPFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-341042047107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G228700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528578.20.0transcription factor MYB117
SwissprotQ9SEZ42e-75MY105_ARATH; Transcription factor MYB105
TrEMBLK7L3D60.0K7L3D6_SOYBN; Uncharacterized protein
STRINGGLYMA07G35581.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-75myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]