PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G227200.1.p
Common NameLOC100802109
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 443aa    MW: 48776 Da    PI: 8.1827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G227200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.6e-30177233259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkg +f+rsYY+Ct+++Cpvkkk+ers  +++v+ i+Y+geHnh+
  Glyma.07G227200.1.p 177 DDGYNWRKYGQKHVKGRDFSRSYYKCTHPNCPVKKKLERSL-EGHVTAIIYKGEHNHQ 233
                          8****************************************.***************8 PP
2WRKY103.79.9e-33327385159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+C+++gC+v+k+ver++ dpk+v +tYeg+Hnh+
  Glyma.07G227200.1.p 327 LDDGYRWRKYGQKVVKGNPYPRSYYKCATQGCNVRKHVERASMDPKAVLTTYEGKHNHD 385
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-26162235IPR003657WRKY domain
PROSITE profilePS5081121.758171235IPR003657WRKY domain
SuperFamilySSF1182902.62E-23174235IPR003657WRKY domain
SMARTSM007741.5E-29176234IPR003657WRKY domain
PfamPF031067.3E-23177233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-36313387IPR003657WRKY domain
SuperFamilySSF1182901.07E-28319387IPR003657WRKY domain
PROSITE profilePS5081137.987322387IPR003657WRKY domain
SMARTSM007741.9E-38327386IPR003657WRKY domain
PfamPF031061.6E-25328385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MVGGRNGEGA GEQAPPPSTA ARHGTTLRPR VSTESVFSCR YGGLGPMTLL SSFFGDGDEC  60
KSFSELLGGA MVDPTAPSPM PTTPFTLPHG FIDSPSPQGQ FGMTHQQMLA QITSQAVPAH  120
FNVQIHSEHP FSISAVSATS LTQFPTGSST RVKESLHYSH SEQKLQSSSV NADKPNDDGY  180
NWRKYGQKHV KGRDFSRSYY KCTHPNCPVK KKLERSLEGH VTAIIYKGEH NHQRPHPNKI  240
TKETQTSNIN SVSKMDLESS QATGEHGSGT SDSEEVGDHE SEEDEKNDEP DAKRRNTEVR  300
LQDPASLHRT VAETRIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY YKCATQGCNV  360
RKHVERASMD PKAVLTTYEG KHNHDVPVAK TNSHTLANNS ASQLKAQNIA IPDDKHSFSS  420
RGVRGNEQRP LGSLRLKEEQ IT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40177387877Probable WRKY transcription factor 4
2lex_A2e-40177387877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.113510.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G227200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583957.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-132WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0R0J6Y40.0A0A0R0J6Y4_SOYBN; Uncharacterized protein
STRINGGLYMA07G35381.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-127WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]