PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G218000.2.p | ||||||||
Common Name | GLYMA_07G218000, LOC100775341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 168aa MW: 19114.8 Da PI: 10.0123 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.4e-20 | 18 | 72 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k Glyma.07G218000.2.p 18 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSK 72 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 18 | 106 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr + Glyma.07G218000.2.p 18 RKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 106 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-19 | 3 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.72E-19 | 9 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.6E-18 | 16 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.54E-15 | 17 | 75 | No hit | No description |
Pfam | PF00046 | 3.3E-17 | 18 | 72 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.7E-10 | 74 | 107 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-21 | 74 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MASNMEDEEE SSNGEPPRKK LRLTKEQSRL LEESFRQNHT LNPKQKESLA MQLKLRPRQV 60 EVWFQNRRAR SKLKQTEMEC EYLKRWFGSL TEQNRRLQRE VEELRAIKVG PPTVISPHSC 120 EPLPASTLSM CPRCERVTST ADKPPSAAAT LSAKVPPTQS RQPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 74 | RRARSKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G218000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141617 | 4e-84 | BT141617.1 Medicago truncatula clone JCVI-FLMt-6H7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528535.1 | 1e-118 | homeobox-leucine zipper protein HOX3 isoform X3 | ||||
Refseq | XP_028241317.1 | 1e-118 | homeobox-leucine zipper protein HOX3-like isoform X2 | ||||
Swissprot | Q0JKX1 | 2e-74 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 2e-74 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0R0JF29 | 1e-117 | A0A0R0JF29_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JZY8 | 1e-116 | A0A445JZY8_GLYSO; Homeobox-leucine zipper protein HOX3 isoform A | ||||
TrEMBL | A0A445K014 | 1e-117 | A0A445K014_GLYSO; Homeobox-leucine zipper protein HOX3 isoform B | ||||
TrEMBL | I1KM50 | 1e-116 | I1KM50_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G34230.1 | 1e-117 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 3e-69 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G218000.2.p |
Entrez Gene | 100775341 |