PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G203000.1.p
Common NameGLYMA_07G203000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 389aa    MW: 43124.1 Da    PI: 7.9875
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G203000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-1755115257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  Glyma.07G203000.1.p  55 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 115
                          89*****************99*************************************995 PP
2Wus_type_Homeobox110.96.8e-3654116264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k
  Glyma.07G203000.1.p  54 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 116
                          689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-1249121IPR009057Homeodomain-like
PROSITE profilePS5007110.2251116IPR001356Homeobox domain
SMARTSM003892.7E-853120IPR001356Homeobox domain
CDDcd000867.96E-854116No hitNo description
Gene3DG3DSA:1.10.10.607.8E-754123IPR009057Homeodomain-like
PfamPF000465.1E-1555115IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSSSNRHWPN MFKSKPCNNP HNQWQHDINS SIVSTGGYQR SPYASGGEER TPEPKPRWNP  60
KPEQIRILEA IFNSGMVNPP RDEIRKIRVQ LQEYGQVGDA NVFYWFQNRK SRSKHKLRHF  120
QNSMNQNHNA EAQQQQKVDA SSLSQTTPPS SSSSSSDKSS SKELAYPIGF SFGFSNVNDV  180
AVPNSPAASV NQTYFQPHNH IDNNLLPQAT EPFSFTMHNN NVQGVVDKNT ITTLGFSVPQ  240
FSSNMMQSQL QCQQNVGPCT SLLLNEIMNY GTLSKKDQDE DKALKITHPQ LSFPLTSTPP  300
TTTIAPSIST VPCPITQLQG VGEVAGDRAK CTVFINGVEF EVVMGPFNVH QAFGDEAVLI  360
HSSGNPVPTD KRGITLHPLH HGAYYYLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G203000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025985102.10.0WUSCHEL-related homeobox 9 isoform X2
TrEMBLI1KLR30.0I1KLR3_SOYBN; Uncharacterized protein
STRINGGLYMA07G32430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-63homeobox-3