PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G196200.3.p
Common NameGLYMA_07G196200, LOC100780865
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LSD
Protein Properties Length: 129aa    MW: 13990.1 Da    PI: 8.7238
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G196200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.72.6e-154064125
              zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                         Cg+Cr lLsYPrGA++V+C++C+tV
  Glyma.07G196200.3.p 40 CGSCRRLLSYPRGAKHVKCSCCQTV 64
                         ************************9 PP
2zf-LSD141.81.7e-1378102125
              zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                          Cg+C +lL+YP+GA+ VRC++C +V
  Glyma.07G196200.3.p  78 CGSCAVLLMYPYGASQVRCSSCRFV 102
                          **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.0E-193767IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-124064IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.3E-1275103IPR005735Zinc finger, LSD1-type
PfamPF069438.0E-1178102IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MQSQQTVKEE DDEGPPPGWQ PLPAQPPPPP RPSGWAQMVC GSCRRLLSYP RGAKHVKCSC  60
CQTVNIVLEA DQVGQVKCGS CAVLLMYPYG ASQVRCSSCR FVTEIGAHNK RPPWSVQQRK  120
PSPPKTGC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.254150.0root
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G196200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529323.17e-89protein LOL2
RefseqXP_028241037.17e-89protein LOL2
SwissprotO654263e-43LOL2_ARATH; Protein LOL2
TrEMBLA0A0B2PIB02e-87A0A0B2PIB0_GLYSO; Protein LOL2
TrEMBLA0A0R0J6642e-87A0A0R0J664_SOYBN; Uncharacterized protein
STRINGGLYMA07G31600.13e-88(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-43lsd one like 2