PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G182700.1.p
Common NameGLYMA_07G182700, LOC102669848
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 356aa    MW: 39585.8 Da    PI: 4.6506
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G182700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-15193229135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Glyma.07G182700.1.p 193 CQHCGISEksTPAMRRGPAGPRSLCNACGLMWANKGT 229
                          *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.7E-75388IPR010399Tify domain
PROSITE profilePS5132013.1915388IPR010399Tify domain
PfamPF062004.7E-115687IPR010399Tify domain
PfamPF062035.8E-15124166IPR010402CCT domain
PROSITE profilePS5101712.888124166IPR010402CCT domain
PROSITE profilePS501149.038187244IPR000679Zinc finger, GATA-type
SMARTSM004016.4E-13187240IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12189241No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15191234IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.15E-15192235No hitNo description
PfamPF003202.1E-13193229IPR000679Zinc finger, GATA-type
PROSITE patternPS003440193220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDNSLNNPSD NGEDPPPPPP VPMQVDGFQP FHYANCSDEG EEAVPVTNAS SAMHARASEL  60
TISFEGEVYV FPAVTPEKVQ AVLLLLGAQE MTNSAPTSDI LLQQNYQDIR EINDPSRSSK  120
LSRRFASLVR FREKRKERCF EKKIRYSCRK EVAQRMHRKN GQFASMKEDY KSPAENWDSS  180
NGTPCPESTE RRCQHCGISE KSTPAMRRGP AGPRSLCNAC GLMWANKGTL RDLSKAARIA  240
FEQNELDTSA DIKPSTTEAE HSFAKQDKEG SPEETKPVQM DSSRSPEKTN DQFIIGTAES  300
VTDNLSIQVE NHALSLHEQD TLEDLADASG TEFEIPAGFD DQVDIDDSNM RTYWL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.61960.0cotyledon| hypocotyl| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G182700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0063589e-53AP006358.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT36C13, TM0100b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583774.10.0GATA transcription factor 28
RefseqXP_028240876.10.0GATA transcription factor 28-like
SwissprotQ8H1G05e-62GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A445JYD40.0A0A445JYD4_GLYSO; GATA transcription factor 28 isoform A
TrEMBLI1KL590.0I1KL59_SOYBN; Uncharacterized protein
STRINGGLYMA07G30140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-54ZIM-like 1