PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G171200.1.p
Common NameGLYMA_07G171200, LOC100804937
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 634aa    MW: 69792.6 Da    PI: 6.6105
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G171200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-28194247155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Glyma.07G171200.1.p 194 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 247
                          79*******************.********************************8 PP
2Response_reg74.83.2e-25141221109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + +++++q+  + +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ ++ + + +
  Glyma.07G171200.1.p  14 VLVVDDDATTLKIIEQMSIRCRY-RVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMK 101
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ +eel++
  Glyma.07G171200.1.p 102 GIRHGACDYLIKPVREEELRN 122
                          *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.7E-1512597IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.9E-3911141No hitNo description
SuperFamilySSF521722.42E-3311133IPR011006CheY-like superfamily
SMARTSM004486.8E-2912124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.49313128IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2114123IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-2515127No hitNo description
Gene3DG3DSA:1.10.10.607.8E-30191252IPR009057Homeodomain-like
PROSITE profilePS5129410.194191250IPR017930Myb domain
SuperFamilySSF466892.15E-19192251IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24194247IPR006447Myb domain, plants
PfamPF002492.4E-7196245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MAPAAAEFPV GLRVLVVDDD ATTLKIIEQM SIRCRYRVTT CTEATVALNL LRERKGCFDV  60
VLSDVHMPDM DGYKLLEHVG LEMDLPVIMM SGDSTTSAVM KGIRHGACDY LIKPVREEEL  120
RNIWQHVVRK FWNDSKEQDN SGSMEDSDQN KRGNDDAEYT SVADAAVVKA PKKRSSLKEE  180
DIELESDDPA ASKKPRVVWS VELHQQFVSA VNQLGLDKAV PKRILELMNV PGLTRENVAS  240
HLQKFRLYLK RLTGVAQQQN GMLNTVPGPI ESNLGTNGRF DVQALAAAGH VPPETLAAIH  300
AELLGHPTNN IMSTVDQTTL LQASIQGLKH SHAGHAVAYG QPLVKCPSNI GKNFSPSILT  360
VNDTSSGYGA WLSSNNTIGL VRPNNSVERV GIQNNNMLIL EHQQRQQPQQ KQQQQQQKQQ  420
QQLQQQSLIH DRSCSINVQP SCLVVPSQSS ETFQAINSPA SVNQDCSFAW NAIIDYSLLP  480
QKSNNSFSAS QFPGGDTKAR GVLYGYTTPS SCSTSSSNGN IQQLQNSTLT FGAARPLPSL  540
LPMTDRKDPY GFKSGDLLDQ VCFRNLGFVG KDSCIPSRFV ENEIESSVSD FTQMKVNVDI  600
SGNRQKEEPN IPKVSHPIIE RYPSRDHSSV FAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-22191253264ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.599320.0flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G171200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528343.10.0two-component response regulator ORR21 isoform X1
RefseqXP_006583726.10.0two-component response regulator ORR21 isoform X1
RefseqXP_028240740.10.0two-component response regulator ORR21-like isoform X1
RefseqXP_028240741.10.0two-component response regulator ORR21-like isoform X1
SwissprotA2XE311e-143ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-143ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0B2RQH30.0A0A0B2RQH3_GLYSO; Two-component response regulator
TrEMBLI1KKW60.0I1KKW6_SOYBN; Two-component response regulator
STRINGGLYMA07G26890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-110response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]