PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G163700.1.p | ||||||||
Common Name | GLYMA_07G163700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 469aa MW: 53047.1 Da PI: 8.6766 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1.1e-17 | 8 | 96 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +l+ + +l+s++l++p +f++++g + s+ tl+ ++g +W + l +k ++r+++ +GW++Fv+ + +g f+vF+++g+s+f v+ Glyma.07G163700.1.p 8 KLVLPTTLQSRQLRIPDNFLRKYGTQ--LSTIATLTVPDGSVWPIGL--KKADNRIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSF--IVH 93 445567778888***********966..9999***************..*************************************9..999 PP EE- CS B3 96 vfr 98 +f+ Glyma.07G163700.1.p 94 IFN 96 986 PP | |||||||
2 | B3 | 60.1 | 3.7e-19 | 334 | 425 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vl ps+ + ++++lp +fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l + +e l Glyma.07G163700.1.p 334 VLRPSYLYRGCIMYLPSTFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVL 418 78899******************876743...59999999********665555..66***********************998899999 PP EEEEE-S CS B3 93 vvkvfrk 99 v+vfr Glyma.07G163700.1.p 419 QVTVFRV 425 9999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-24 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.96E-19 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.352 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-24 | 323 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-24 | 324 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.91E-21 | 329 | 424 | No hit | No description |
SMART | SM01019 | 3.5E-19 | 331 | 426 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.325 | 331 | 426 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-17 | 334 | 424 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MPRPCFDKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWPI GLKKADNRIW 60 FVDGWQDFVQ RYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAMRN HNEGSCFANY 120 HHIFDEMEDV DSLGLSDLSP QYLTPGALQS KGFAGSVDQL TPGKSHTPAL QNLFNGGSKL 180 NRVNWGDGGS AFSLKDANSQ GNQSTRDIGV QFNAVEFKRS TEELKLRYSN SNEEAVNKTA 240 KKKRKSEPCK FLFLFKFSLS GNVKDDIFLL ITNTMCGTID GEEPSGENEE EAEMRYRFYE 300 SASARKRTVT AEERERAINA SKTFEPTNPF CRVVLRPSYL YRGCIMYLPS TFAEKNLNGV 360 SGFIKLQLSN GRQWSVRCLY RGGRAKLSQG WFEFTVENNL GEGDVCVFEL LRMKEVVLQV 420 TVFRVTEDAG LLNQLPMQQQ QQSPNISHTK LLNPHLQHRI STTKLIRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-71 | 297 | 427 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-71 | 297 | 427 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18998 | 0.0 | leaf| root| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G163700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094686 | 0.0 | BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529203.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_028240648.1 | 0.0 | B3 domain-containing transcription factor VRN1-like | ||||
Swissprot | Q8L3W1 | 2e-71 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | K7L245 | 0.0 | K7L245_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G21160.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 | Representative plant | OGRP2051 | 14 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-73 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G163700.1.p |
Publications ? help Back to Top | |||
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