PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G159300.1.p | ||||||||
Common Name | GLYMA_07G159300, LOC100819004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 1020aa MW: 112672 Da PI: 8.0363 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.7e-40 | 102 | 179 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Glyma.07G159300.1.p 102 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 179 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-34 | 97 | 164 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 100 | 177 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-37 | 101 | 181 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.2E-30 | 103 | 176 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.95E-5 | 766 | 914 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.21E-4 | 813 | 912 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1020 aa Download sequence Send to blast |
MEKVAPPPIL MHRKRDLSYD IVSAGPNESW RWEWDSVRFA GKPPPPPPLS PNNDVVFEAE 60 SVVPPLQLKL GGTTRVNNNN ININVSNKRV RSGSPGTASY PMCQVDNCRE DLSKAKDYHR 120 RHKVCEAHSK ASKALLANQM QRFCQQCSRF HPLSEFDEGK RSCRRRLAGH NRRRRKTQPE 180 DVTSATPAPA AAANLEIFNL LTAIAGASQG KFEEKRSQVS DREQLVQILN KIPLPADLAT 240 KLLDAGSGNV NGKKDHVQLQ TPSSSYQCHE SHDLLNHTPA APLTMDLLAV LSTTLSGGSA 300 PDSSASPSQN RSCSSDGGSA DQTRQQQFFS VGGERSSSSS QSPVEDSDCQ EVRVNLPLQL 360 FSSSPEDDSL PKLASSRKYF SSDSSNPAEE RSPSSSPPIV EMQFDLQDGA RGLKPESISS 420 GRGVNANKEA SQSHSSNISL DLFKGSNNWI QQPSSLQSVP FQAGYTSSGS DHSPPSLNSD 480 AQDRTGRIMF KLFDKHPSHF PGTLRAQIYN WLSNRPSDME SYIRPGCVVL SIYASMSSAD 540 WERLEENFLQ HVHSLIQNSD SDFWRNGRFL VHSGSRLVSH KDGKIRICKP WRTWKSPELI 600 SVSPLAIVSG QETSISLKGR NLSTLGTKIH CTGTGSYASA EVIGSAHSGV MYDKIKLSGF 660 KVQDVSPGVL GRCFIEVENG FKGNSFPVII ADETICKELR PLESEFDEEE KICDAISEEH 720 EHHFGRPRSR EEALHFLNEL GWLFQRERFS YVHEVPCYSL DRFKFVLIFA VERNCCMLIK 780 TLLDVLVGKH LQGEWLSTGS VEMLNAIQLL NRAVKGKYVG MVDLLIHYSI PSKNGTSRKY 840 VFPPNLEGPG GITPLHLAAC TSGSESVVDS LTSDPQEIGL KCWESLVDAN GQSPHAYAMM 900 RNNDSYNALV ARKLADRQRG EISVTIANAI EQQSLRVELK QKQSYLVKRG QSSCAKCANA 960 EIRYNRRVPG SHGLLHRPFI YSMLAVAAVC VCVCVFFRGR PFVGSVAPFS WENLDYGTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-32 | 93 | 176 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.14317 | 0.0 | leaf| meristem| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G159300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235330 | 0.0 | AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530322.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Refseq | XP_028240597.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A445JXD1 | 0.0 | A0A445JXD1_GLYSO; Squamosa promoter-binding-like protein 14 isoform A | ||||
TrEMBL | I1KKM7 | 0.0 | I1KKM7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G19770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 | Representative plant | OGRP7138 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G159300.1.p |
Entrez Gene | 100819004 |
Publications ? help Back to Top | |||
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