PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G158500.1.p | ||||||||
Common Name | GLYMA_07G158500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 28554.6 Da PI: 7.9849 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25 | 6e-08 | 15 | 50 | 1 | 37 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCsk 37 kfY +YAk +GF +rk++ ++ nge+++++fvC + Glyma.07G158500.1.p 15 KFYYAYAKFIGFAIRKDEVRYV-SNGEVKRHQFVCDR 50 6****************99998.8999********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-5 | 15 | 51 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MPLWGRIASE EVAYKFYYAY AKFIGFAIRK DEVRYVSNGE VKRHQFVCDR LHGKVDNADM 60 FYEKGLILED GKLMHLFWVN GTSRIDYQCF GDVVAFNATY KKNNEAIEEV FHDATHRLCG 120 WHLQKNAFEN MKSQEFLHDF KKAFSIYECV NSVIKTYIQR KNTLVELLYN FEHSLRDYRY 180 NELVSNFNSL YTNPVIDSSL LRIEEHVATL YTRYIYNKVK VQIVNVSGLN VTPRTEALDK 240 VM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G158500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231066.1 | 4e-41 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A445JXB4 | 0.0 | A0A445JXB4_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7L206 | 0.0 | K7L206_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G19571.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF845 | 4 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-07 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G158500.1.p |