PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G146300.1.p
Common NameGLYMA_07G146300, LOC100775697
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 288aa    MW: 32725 Da    PI: 9.3862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G146300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-082873346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         rWT+eE +l+ +a + + ++   +W ++a++++ g+t  +++  ++ 
  Glyma.07G146300.1.p 28 RWTAEENKLFENALAYYDKDtpdRWMRVAAMIP-GKTVGDVIKQYRE 73
                         8********************************.******9999986 PP
2Myb_DNA-binding43.19.6e-14136180347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Glyma.07G146300.1.p 136 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 180
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9322479IPR017884SANT domain
SMARTSM007171.9E-72577IPR001005SANT/Myb domain
CDDcd001671.29E-52874No hitNo description
SuperFamilySSF466894.56E-112881IPR009057Homeodomain-like
PfamPF002494.3E-62873IPR001005SANT/Myb domain
PROSITE profilePS5129420.655129185IPR017930Myb domain
SuperFamilySSF466896.88E-17130184IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-18132184IPR006447Myb domain, plants
SMARTSM007175.8E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-12133180IPR009057Homeodomain-like
CDDcd001671.66E-10136181No hitNo description
PfamPF002493.7E-12136180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNRGIEVLSP ASYLQSSNWL FQESKGARWT AEENKLFENA LAYYDKDTPD RWMRVAAMIP  60
GKTVGDVIKQ YRELEEDVGV IEAGLIPVPG YTTASSFTLE WVNNQGYDEF KQFCSVGGKR  120
GASTRPTEQE RKKGVPWTEE EHRQFLLGLK KYGKGDWRNI SRNFVITRTP TQVASHAQKY  180
FIRQLTGGKD KRRSSIHDIT MVNLQETKSA SSDTTKPSSP LQNQKLSSMV KQEYEWKLPC  240
EGMPIVFNST SGNMFMSAPL HGISSYESRP QEQNLLRQSS WMPVFTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-172693875RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G146300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-165AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014633488.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-111DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0B2QRH70.0A0A0B2QRH7_GLYSO; Transcription factor DIVARICATA
TrEMBLI1KKB10.0I1KKB1_SOYBN; Uncharacterized protein
STRINGGLYMA07G17660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-118MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]