PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G134800.1.p | ||||||||
Common Name | GLYMA_07G134800, LOC100799088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 665aa MW: 74516.9 Da PI: 6.3935 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.5e-24 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kvlt sd++++g +++ +k+a+e+ ++k++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF Glyma.07G134800.1.p 120 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSKSTPTQELVAKDLQGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL-- 207 99****************************9555555679************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + +++el+v+v+r Glyma.07G134800.1.p 208 RGNNGELRVGVRR 220 3489999****98 PP | |||||||
2 | Auxin_resp | 94.6 | 1.5e-31 | 246 | 327 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v+v+k+++a+++k+ vGmRfkm+fe+++s+e +r+sGt+ gv+d++p +W nS+WrsLk Glyma.07G134800.1.p 246 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLEAINQKCNVGMRFKMRFEGDESPEndKRFSGTILGVEDISP-HWVNSNWRSLK 327 789***************6..9********************************9833577**********99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-38 | 111 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-38 | 113 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-19 | 118 | 220 | No hit | No description |
PROSITE profile | PS50863 | 12.041 | 120 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-22 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-22 | 120 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.5E-30 | 246 | 327 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.0E-12 | 479 | 641 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.574 | 554 | 635 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.28E-11 | 557 | 630 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MSLNCGGCGG EEDELYEQLW KACAGPHVEV PRTGQRVFYF PQGHMEQLEV STNQELNQRI 60 PLFKLSSKIL CRVVNVHLLA EQETDEVYAQ ITLVPESNQT EPTSPDPCPA ELPRPRVHSF 120 CKVLTASDTS THGGFSVLRK HATECLPALD MSKSTPTQEL VAKDLQGFEW RFKHIFRGQP 180 RRHLLTTGWS TFVTSKRLVA GDTFVFLRGN NGELRVGVRR IAPLQSSMPS SVISSQSMHL 240 GVLATASHAV ATQTLFVVYY KPRTSQFIVS VNKYLEAINQ KCNVGMRFKM RFEGDESPEN 300 DKRFSGTILG VEDISPHWVN SNWRSLKVQW DEPASFPRPD RVSSWEIEHI LACVPTTSSQ 360 PAVIKNKRPR QASEVPDLGD TPLAAPTFWD AGLTQCDMTQ LRVMTESKRS DSSSHMRHHN 420 SKSNNNGISM NQTEASWLSS PQLYQDTTDD NKSILAWPIS KPHSERLNND HFLDQVDKNI 480 NKVEAATSYR LFGIDLIDHA RNNSLSVENA SGVASECKTD VNHESDLSKA SKEWNQEQLL 540 VSPKETQSKQ VCSRSCTKVQ MQGVAVGRAV DLTTLDGYDQ LVDELEKMFD IKGQLQHRNK 600 WETVFTDDEG DMMLVGDDPW PEFCNMVKRI FICSSQDVHK LSSGSKLPIS SMGEIVISLN 660 TTET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-162 | 6 | 348 | 9 | 353 | Auxin response factor 1 |
4ldw_A | 1e-162 | 6 | 348 | 9 | 353 | Auxin response factor 1 |
4ldw_B | 1e-162 | 6 | 348 | 9 | 353 | Auxin response factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21376 | 0.0 | epicotyl| flower| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G134800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-124 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529106.1 | 0.0 | auxin response factor 9 | ||||
Refseq | XP_028240317.1 | 0.0 | auxin response factor 9-like | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A445JWD6 | 0.0 | A0A445JWD6_GLYSO; Auxin response factor | ||||
TrEMBL | I1KK13 | 0.0 | I1KK13_SOYBN; Auxin response factor | ||||
STRING | GLYMA07G16170.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G134800.1.p |
Entrez Gene | 100799088 |