PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G126900.1.p
Common NameGLYMA_07G126900, LOC100779092
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 261aa    MW: 29148.8 Da    PI: 6.2418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G126900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W+++Ed  l+++ +++G+g +W + +++ g++R++k+c++rw++yl
  Glyma.07G126900.1.p 14 RGPWSPDEDATLKNYLEKHGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding42.91.2e-1371111446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +T+eEd ++  +    G++ W++Ia+ ++ gRt++++k++w++
  Glyma.07G126900.1.p  71 FTEEEDNIICTLYDIIGSR-WSLIAAQLP-GRTDNDVKNHWNT 111
                          9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.719962IPR017930Myb domain
SuperFamilySSF466891.02E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-111364IPR001005SANT/Myb domain
PfamPF002494.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-231569IPR009057Homeodomain-like
CDDcd001675.50E-91662No hitNo description
PROSITE profilePS5129420.20563117IPR017930Myb domain
SMARTSM007171.1E-1167115IPR001005SANT/Myb domain
PfamPF002495.4E-1270111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2270116IPR009057Homeodomain-like
CDDcd001671.31E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRAPCCDKS NVKRGPWSPD EDATLKNYLE KHGTGGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDNIIC TLYDIIGSRW SLIAAQLPGR TDNDVKNHWN TKLKKKFLAG  120
NTSSSIATTS NNIVTFSNTS YSHQVEGLVL DQKLNPANWF DSYDVNFELE QTPIPVPFPM  180
PQELEAFNYT GSISCSTAPP PYKEVSLMLS NADKHTLWFG YDQASEDDPN LLEFVLDDLH  240
QMNQGFVFQD KSSQVGPPSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G126900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028630.0DQ902863.1 Glycine max transcription factor MYBJ6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583568.10.0transcription factor MYB36
RefseqXP_028241474.10.0transcription factor MYB36-like
TrEMBLA0A445JW380.0A0A445JW38_GLYSO; Transcription factor RAX3
TrEMBLK7L1E10.0K7L1E1_SOYBN; Uncharacterized protein
STRINGGLYMA07G15250.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-71myb domain protein 84