PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.07G117500.2.p | ||||||||
Common Name | GLYMA_07G117500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 33864.8 Da PI: 8.6763 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 5.1e-12 | 150 | 196 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR++i + f L ++P + kK +Ka++L+ A++Y+k+Lq Glyma.07G117500.2.p 150 DHIMSERKRRENIAKLFIALSAVIPVL-----KKTDKASVLKTAIDYVKYLQ 196 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.833 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 150 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-10 | 151 | 200 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-16 | 151 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 151 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MEESPERWLR FLEMDECNLF GHMHSLVEVF KGENLVQQEK SCKSHPCDSN ITKESTTILL 60 RNPINDSSSL EKNPGFDNRS SLKQHASQDE PLFSSSSMPY TLSFEDSTAV PYVLNKTCQC 120 YHGENSKETQ EEPKNNRKSK RGRSSSEIQD HIMSERKRRE NIAKLFIALS AVIPVLKKTD 180 KASVLKTAID YVKYLQKRVK DLEEESKKRK VEYAVCFKTN KYNIGTVVDD SDIPINIRPK 240 IEARVSGKDA LIKVMCEKRK DIVAKILGKL AALNLSIVCC NVLPFANSAL NITCIAQGQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 154 | 159 | ERKRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.07G117500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT096818 | 0.0 | BT096818.1 Soybean clone JCVI-FLGm-15B24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240220.1 | 0.0 | uncharacterized protein LOC100799087 | ||||
Refseq | XP_028240189.1 | 0.0 | transcription factor bHLH18-like isoform X1 | ||||
TrEMBL | A0A0R0J9Y1 | 0.0 | A0A0R0J9Y1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G13423.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 6e-35 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.07G117500.2.p |