PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G112400.2.p

Common Name

GLYMA_07G112400, LOC100810641

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 309aa MW: 34007 Da PI: 7.8586

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G112400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.5e-19	145	199	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Glyma.07G112400.2.p 145 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTK 199 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	3e-40	145	234	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Glyma.07G112400.2.p 145 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLMPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 233 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.07G112400.2.p 234 L 234 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.6E-33	1	109	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	1.7E-18	119	202	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-18	131	202	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	141	201	IPR001356	Homeobox domain
SMART	SM00389	3.5E-16	143	205	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	145	199	IPR001356	Homeobox domain
CDD	cd00086	1.80E-15	145	202	No hit	No description
PROSITE pattern	PS00027	0	176	199	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.6E-11	201	235	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	9.4E-27	201	244	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGEKDDGLGL GLSLKLGWGE NNDNNNNQQQ HPFNVHKPPQ SVPNQRVSVN SLFHFHDRSS 60 EMRSFFRGID VNLPPPPPSA ALAAFDDENG VSSPNSTISS ISGKRSEREG NGEENERTSS 120 SRGGGGSDDD EGGACGGDAD ADASRKKLRL SKEQALVLEE TFKEHNTLNP KQKQALAKQL 180 NLMPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCENLTEE NRRLQKEVQE LRALKLSPHL 240 YMQMNPPTTL TMCPSCERVA VSSASSSSSA TMPSALPPAN LNPVGPTIQR PMPVNPWAAM 300 LNQHRGRP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	149	SRKKLRL
2	193	201	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.12583	0.0	hypocotyl\| leaf\| seed coat\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G112400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530150.1	0.0	homeobox-leucine zipper protein HAT3 isoform X2
Swissprot	P46602	1e-97	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	I1KJL5	0.0	I1KJL5_SOYBN; Uncharacterized protein
STRING	GLYMA07G14270.2	1e-162	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-71	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Glyma.07G112400.2.p
Entrez Gene	100810641

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]