PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G109600.1.p

Common Name

GLYMA_07G109600, LOC100778566

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 339aa MW: 37267.1 Da PI: 8.8129

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G109600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.8	1.1e-41	198	275	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ Glyma.07G109600.1.p 198 RCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 275 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-35	193	260	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.376	196	273	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.16E-38	197	277	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-31	199	272	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MLDYEWGNPS TIMLTGNEDS SAAGSDQTHR QIFDHYASHT LIPDHFLHAP MHSTATTAAA 60 TTVDFTHHHF NPQPHHHNHM NHHHHHHAFF DPRAFHGASN TSYPPPPSML SLDPLPHVNA 120 VGSGPGHGPG PGPGPGGLLL VPKSEEVGRP MDFVGSRIGL NLGGRTYFSS SEDDFVSRLY 180 RRSRPVEPGS TISSNSPRCQ AEGCNADLSQ AKHYHRRHKV CEFHSKAATV IAAGLTQRFC 240 QQCSRFHLLS EFDNGKRSCR KRLADHNRRR RKTQQPTQEI QKSQPSLDNV ARSPPDSGAQ 300 SSSSVTVAVS PPDYFRQRPY QSTNNPSSIS SSLFFSSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	189	272	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.10787	0.0	flower\| hypocotyl\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G109600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530168.1	0.0	squamosa promoter-binding-like protein 8
TrEMBL	I1KJN9	0.0	I1KJN9_SOYBN; Uncharacterized protein
STRING	GLYMA07G14610.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6801	33	48
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-74	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Glyma.07G109600.1.p
Entrez Gene	100778566