PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G109500.1.p | ||||||||
Common Name | GLYMA_07G109500, LOC100780159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 343aa MW: 38253 Da PI: 7.683 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.3 | 1.2e-39 | 154 | 230 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrh+vC++hskap+++v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++ Glyma.07G109500.1.p 154 RCQVEGCHVALVNAKEYHRRHRVCDMHSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS 230 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-33 | 151 | 216 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.017 | 152 | 229 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.49E-37 | 153 | 231 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 155 | 228 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDFGENNMFS LNTHTKEENE NTPNNNNNIV NVWYSSWDAT TTNSNTLHTS TTAAEGYAGG 60 SHSHHHQQLY GGEGCHVQAD PHLTCLHLGK RHYFEDVTTN GDVNNATPLG NRHVCSGGGA 120 GYVFAGNDKR GRGYYRGGGA AGGGKTAPFA MVPRCQVEGC HVALVNAKEY HRRHRVCDMH 180 SKAPKAVVLG LEQRFCQQCS RFHVVSEFDD SKRSCRRRLA GHNERRRKSS HLSVTRNSRQ 240 GCALSLLSSG SGSRDHHNWL SHHADFSTRC SAALRELIAE NRAALMTRQQ QQLVYDRVWP 300 HLVVAPHHDA DAAVEEEDFE DLQQQQQPES NYFPQHMFPQ TQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-28 | 155 | 228 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 144 | RGGGAAGGGK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26755 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G109500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 5e-48 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530170.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | K7L1B4 | 0.0 | K7L1B4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G14641.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-35 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G109500.1.p |
Entrez Gene | 100780159 |